Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 1.1e-167 593.2 295 100.0
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.4e-122 443.4 293 71.7
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 2.4e-122 442.6 292 74.3
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 1.2e-121 440.3 292 74.3
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 2.0e-121 439.5 292 74.3
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 6.6e-120 434.5 292 73.6
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 8.6e-120 434.1 292 71.2
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 5.5e-119 431.4 290 72.8
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 1.2e-118 430.3 292 72.6
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 6.1e-118 427.9 295 70.2
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.3e-117 426.0 293 72.0
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 3.0e-117 425.6 292 71.6
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 4.0e-117 425.2 293 70.0
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.5e-116 423.3 292 71.2
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.4e-116 421.8 292 70.9
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 7.5e-116 421.0 295 69.2
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 2.2e-115 419.5 293 69.6
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 2.2e-115 419.5 309 66.3
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 6.3e-115 417.9 293 68.9
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 1.1e-114 417.2 297 69.0
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 4.1e-114 415.2 294 67.3
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 4.5e-113 411.8 293 68.6
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 5.9e-113 411.4 295 67.8
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 5.9e-113 411.4 290 70.3
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 7.8e-113 411.0 312 64.7
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.0e-112 410.6 295 68.5
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 2.9e-112 409.1 293 66.9
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 2.9e-112 409.1 294 65.6
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 6.6e-112 407.9 295 67.8
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 8.6e-112 407.5 293 68.3
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 1.1e-111 407.1 294 66.0
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 1.9e-111 406.4 293 66.2
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 1.9e-111 406.4 295 67.5
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 4.3e-111 405.2 295 67.1
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 2.1e-110 402.9 293 66.6
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 2.1e-110 402.9 293 66.9
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 6.1e-110 401.4 294 66.7
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 1.8e-109 399.8 294 66.3
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 2.3e-109 399.4 295 66.1
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 2.3e-109 399.4 293 66.2
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.0e-109 398.7 319 64.9
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 2.0e-108 396.4 295 65.4
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 4.4e-108 395.2 297 64.6
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 2.9e-107 392.5 293 64.5
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 2.9e-107 392.5 293 64.5
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 2.9e-107 392.5 290 65.9
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 4.1e-106 388.7 291 66.0
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 5.4e-106 388.3 294 65.3
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 7.0e-106 387.9 295 66.1
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 1.2e-105 387.1 293 65.5
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 4.6e-105 385.2 295 65.4
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 1.3e-104 383.6 310 61.0
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-104 383.6 299 65.2
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 3.0e-104 382.5 295 63.4
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 5.0e-104 381.7 292 63.7
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 1.2e-102 377.1 296 62.8
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 2.1e-102 376.3 296 62.5
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 2.1e-102 376.3 295 64.1
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 4.7e-102 375.2 294 65.3
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 1.8e-101 373.2 293 61.4
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 4.0e-101 372.1 299 61.9
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 4.0e-101 372.1 361 54.0
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 2.0e-100 369.8 294 65.0
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-99 367.1 277 65.3
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 3.7e-99 365.5 297 62.6
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 1.4e-98 363.6 268 67.2
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.6e-97 360.1 255 69.0
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 6.0e-97 358.2 297 60.3
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 1.1e-95 354.0 293 61.1
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.6e-94 350.1 288 58.3
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 2.1e-94 349.7 329 57.8
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.6e-94 349.0 273 61.9
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 5.2e-93 345.1 290 59.3
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.2e-92 344.0 299 57.5
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 2.0e-92 343.2 264 64.4
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 2.6e-92 342.8 292 58.6
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 4.9e-91 338.6 292 58.6
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 2.7e-89 332.8 239 66.5
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 7.8e-89 331.3 295 55.9
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.7e-88 330.1 312 56.1
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 3.9e-88 328.9 227 70.5
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 4.3e-87 325.5 283 58.7
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 7.1e-82 308.1 211 70.6
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 9.2e-82 307.8 228 66.7
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.8e-81 304.7 201 69.7
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-80 303.9 230 66.5
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 2.3e-80 303.1 200 72.5
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 6.6e-80 301.6 201 70.6
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 2.1e-78 296.6 273 57.5
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 3.6e-78 295.8 257 57.6
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 9.3e-74 281.2 175 75.4
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 3.5e-73 279.3 286 53.1
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 8.7e-72 274.6 304 44.4
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 1.1e-69 267.7 290 44.8
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 1.2e-68 264.2 198 63.6
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 3.4e-68 262.7 296 46.6
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 7.1e-66 255.0 291 45.0
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 9.3e-66 254.6 211 59.7
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 1.6e-62 243.8 293 48.5
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 1.4e-58 230.7 190 62.1
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 1.4e-58 230.7 186 60.2
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 4.6e-57 225.7 185 61.6
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 6.0e-57 225.3 185 61.1
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 4.9e-51 205.7 258 41.5
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 2.1e-49 200.3 208 50.0
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 4.6e-41 172.6 124 65.3
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 7.9e-41 171.8 137 63.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 3.4e-36 156.4 326 33.1
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 4.5e-36 156.0 95 80.0
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 7.9e-33 145.2 96 75.0
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 2.3e-32 143.7 96 70.8
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 2.2e-30 137.1 95 69.5
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 2.8e-30 136.7 94 71.3
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 2.0e-28 130.6 125 54.4
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 7.7e-28 128.6 90 68.9
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 2.9e-27 126.7 147 47.6
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 3.3e-23 113.2 171 36.8
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.3e-22 111.3 107 55.1
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 2.8e-22 110.2 76 69.7
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 8.2e-22 108.6 81 61.7
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 3.1e-21 106.7 122 44.3
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-20 104.8 68 72.1
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 5.0e-19 99.4 98 51.0
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 8.5e-19 98.6 93 52.7
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 1.5e-18 97.8 95 57.9
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 9.4e-18 95.1 92 51.1
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 2.1e-17 94.0 55 76.4
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 4.4e-15 86.3 162 32.7
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 4.1e-13 79.7 96 47.9
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 2.9e-11 73.6 53 60.4
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 3.8e-11 73.2 58 58.6
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 8.5e-11 72.0 84 47.6


User provided reference genes

Program Settings