Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 5.2e-215 750.7 374 100.0
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 3.7e-176 621.7 370 79.7
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 8.2e-176 620.5 372 77.4
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 2.4e-175 619.0 372 79.6
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 5.9e-174 614.4 374 78.3
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 1.0e-173 613.6 374 78.1
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 2.9e-173 612.1 372 77.4
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 5.0e-173 611.3 370 78.6
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 2.5e-172 609.0 372 77.2
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 4.2e-172 608.2 370 77.8
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 4.6e-171 604.7 352 81.0
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 4.6e-171 604.7 371 77.1
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 3.3e-169 598.6 352 79.5
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 7.4e-169 597.4 383 74.2
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.3e-168 596.7 381 75.1
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 6.3e-168 594.3 384 72.9
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 8.2e-168 594.0 352 79.0
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 1.1e-167 593.6 373 74.3
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 3.1e-167 592.0 382 74.6
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 9.1e-167 590.5 383 74.2
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 9.1e-167 590.5 352 78.7
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 9.1e-167 590.5 373 75.3
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 9.1e-167 590.5 348 79.9
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 2.0e-166 589.3 373 73.2
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 3.4e-166 588.6 356 77.0
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 7.7e-166 587.4 392 71.7
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 7.7e-166 587.4 355 78.3
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 2.9e-165 585.5 370 75.9
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 2.9e-165 585.5 381 73.8
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 3.8e-165 585.1 407 70.5
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 5.0e-165 584.7 356 77.8
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 5.0e-165 584.7 356 77.8
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 6.5e-165 584.3 352 78.7
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 1.4e-164 583.2 356 77.5
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 7.2e-164 580.9 378 74.1
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 9.4e-164 580.5 369 75.9
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 1.2e-163 580.1 357 77.3
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 1.2e-163 580.1 356 77.2
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 4.7e-163 578.2 356 77.2
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 6.1e-163 577.8 373 73.5
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 6.1e-163 577.8 359 74.4
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 1.0e-162 577.0 379 74.1
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 2.3e-162 575.9 374 73.5
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 2.3e-162 575.9 358 77.9
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 2.3e-162 575.9 360 74.7
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 3.0e-162 575.5 356 76.7
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 3.9e-162 575.1 360 74.2
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 6.7e-162 574.3 347 79.5
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 6.7e-162 574.3 359 74.1
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 1.1e-161 573.5 359 73.8
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.1e-161 573.5 359 74.1
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 2.0e-161 572.8 357 75.9
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.0e-161 572.8 347 78.4
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 2.6e-161 572.4 352 76.7
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 5.7e-161 571.2 349 78.2
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 1.3e-160 570.1 354 76.6
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 1.3e-160 570.1 358 76.8
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 2.8e-160 568.9 359 74.4
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 4.8e-160 568.2 371 70.9
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 6.3e-160 567.8 370 71.4
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 8.2e-160 567.4 371 70.9
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 1.4e-159 566.6 396 69.9
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 1.4e-159 566.6 354 76.6
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 1.8e-159 566.2 383 72.8
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 2.4e-159 565.8 361 74.5
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 7.0e-159 564.3 385 71.9
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 7.0e-159 564.3 365 73.7
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 1.2e-158 563.5 358 75.7
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 5.9e-158 561.2 382 72.3
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 5.9e-158 561.2 381 72.7
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 2.9e-157 558.9 352 76.4
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 5.0e-157 558.1 352 76.4
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 6.5e-157 557.8 385 68.8
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 1.1e-156 557.0 353 74.8
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 1.4e-156 556.6 377 70.6
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.9e-156 556.2 352 76.7
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 3.2e-156 555.4 353 74.8
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 1.6e-155 553.1 352 75.6
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 2.7e-155 552.4 352 75.3
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 4.7e-155 551.6 352 75.6
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.8e-154 549.7 343 76.4
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 1.8e-154 549.7 354 71.8
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 2.3e-154 549.3 358 73.2
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 3.0e-154 548.9 358 72.9
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 2.0e-153 546.2 378 72.5
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 4.4e-153 545.0 349 72.8
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 4.8e-152 541.6 387 69.0
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 1.4e-151 540.0 327 78.3
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 3.1e-151 538.9 387 69.5
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 7.0e-151 537.7 356 72.8
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 2.0e-150 536.2 360 71.7
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 7.7e-150 534.3 355 71.0
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 1.7e-149 533.1 356 71.9
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 5.0e-149 531.6 374 70.1
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 1.5e-148 530.0 314 80.3
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 1.0e-146 523.9 344 70.3
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.3e-146 522.7 356 70.8
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 4.0e-146 521.9 370 67.8
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 5.2e-146 521.5 382 67.5
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 8.8e-146 520.8 352 73.0
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 1.5e-145 520.0 370 68.6
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.7e-144 516.5 374 68.4
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 3.7e-144 515.4 370 68.1
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 6.3e-144 514.6 344 70.9
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 1.4e-143 513.5 314 78.3
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 4.1e-143 511.9 351 69.8
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 4.1e-143 511.9 353 70.3
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 7.0e-143 511.1 344 70.1
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 2.0e-142 509.6 366 68.6
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 2.7e-142 509.2 353 68.8
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 8.0e-139 497.7 343 67.9
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 1.8e-135 486.5 414 61.1
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 9.1e-135 484.2 573 48.0
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.3e-133 480.3 354 67.8
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 2.8e-128 462.6 344 63.7
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.8e-127 459.9 292 75.0
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 2.7e-126 456.1 346 61.8
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.7e-118 429.5 382 59.2
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 3.9e-117 425.6 286 72.0
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 2.3e-69 266.9 194 67.5
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 5.6e-68 262.3 147 81.0
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 7.4e-68 261.9 373 41.8
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 2.5e-60 236.9 187 57.8
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 3.8e-56 223.0 278 47.5
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 3.0e-53 213.4 143 70.6
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 4.1e-50 203.0 181 60.2
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 5.0e-40 169.5 112 75.0
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 2.4e-34 150.6 112 67.9
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.6e-33 147.9 81 82.7
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 7.7e-33 145.6 352 31.2
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 7.5e-28 129.0 95 66.3
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 1.4e-26 124.8 66 83.3
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.7e-16 91.3 56 73.2
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 3.2e-10 70.5 94 44.7
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 2.9e-08 63.9 64 45.3
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 6.6e-08 62.8 45 57.8


User provided reference genes

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