Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 2.3e-58 228.8 126 100.0
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.5e-38 161.8 123 75.6
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 6.0e-38 161.0 123 75.6
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.7e-37 159.5 124 71.8
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 5.1e-37 157.9 123 72.4
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 8.6e-37 157.1 124 69.4
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 1.9e-36 156.0 119 72.3
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.5e-36 155.6 123 71.5
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.3e-36 155.2 124 72.6
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 4.3e-36 154.8 125 70.4
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 1.2e-35 153.3 125 69.6
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 1.2e-35 153.3 124 72.6
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 1.6e-35 152.9 126 69.8
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 1.6e-35 152.9 125 68.8
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 3.6e-35 151.8 126 71.4
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 6.2e-35 151.0 125 71.2
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 1.8e-34 149.4 125 68.0
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 1.8e-34 149.4 125 69.6
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.1e-34 148.7 124 67.7
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 4.0e-34 148.3 124 70.2
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 4.0e-34 148.3 125 66.4
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 5.2e-34 147.9 127 66.1
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 6.8e-34 147.5 128 68.8
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 8.9e-34 147.1 124 69.4
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.2e-33 146.7 126 67.5
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.5e-33 146.4 125 65.6
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 3.4e-33 145.2 127 64.6
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.4e-33 145.2 127 64.6
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.4e-33 144.8 124 66.1
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.4e-33 144.8 124 66.1
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 5.8e-33 144.4 124 66.1
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.8e-33 144.4 127 64.6
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.9e-33 143.7 124 66.9
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 1.3e-32 143.3 121 66.1
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.7e-32 142.9 124 65.3
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.2e-32 142.5 124 65.3
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.2e-32 142.5 124 65.3
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 2.9e-32 142.1 124 65.3
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-32 142.1 124 65.3
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.7e-32 141.7 127 63.8
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.4e-32 141.0 124 65.3
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 8.4e-32 140.6 120 66.7
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.4e-32 140.6 124 64.5
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 1.1e-31 140.2 121 64.5
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 1.9e-31 139.4 126 65.1
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 2.4e-31 139.0 126 64.3
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 4.1e-31 138.3 126 66.7
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 5.4e-31 137.9 128 60.9
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 5.4e-31 137.9 125 64.0
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 7.1e-31 137.5 126 63.5
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 9.2e-31 137.1 105 72.4
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 9.2e-31 137.1 129 66.7
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 1.2e-30 136.7 126 64.3
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.6e-30 136.3 126 64.3
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.6e-30 136.3 126 64.3
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 1.6e-30 136.3 126 63.5
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 2.7e-30 135.6 124 63.7
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 3.5e-30 135.2 128 64.8
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 7.8e-30 134.0 94 75.5
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 7.8e-30 134.0 126 62.7
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 1.3e-29 133.3 123 61.8
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 1.3e-29 133.3 125 64.0
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 1.7e-29 132.9 126 64.3
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 2.3e-29 132.5 125 61.6
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 3.0e-29 132.1 123 63.4
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 3.0e-29 132.1 130 60.0
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 3.0e-29 132.1 122 60.7
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 5.1e-29 131.3 124 62.1
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 1.1e-28 130.2 124 62.9
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 1.1e-28 130.2 127 61.4
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.1e-28 130.2 124 61.3
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.5e-28 129.8 124 59.7
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.5e-28 129.8 124 59.7
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.5e-28 129.8 126 59.5
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.9e-28 129.4 125 61.6
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 2.5e-28 129.0 122 59.8
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 2.5e-28 129.0 108 66.7
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 2.5e-28 129.0 129 61.2
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 3.3e-28 128.6 124 61.3
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.3e-28 128.6 128 60.2
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 4.3e-28 128.3 125 61.6
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 4.3e-28 128.3 125 57.6
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 5.6e-28 127.9 123 57.7
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 5.6e-28 127.9 121 57.9
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 9.6e-28 127.1 122 62.3
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 9.6e-28 127.1 122 63.1
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 1.6e-27 126.3 125 60.0
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 2.1e-27 125.9 125 60.0
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.8e-27 125.6 122 61.5
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 2.8e-27 125.6 126 60.3
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 3.6e-27 125.2 127 59.8
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 3.6e-27 125.2 126 57.9
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 3.6e-27 125.2 114 62.3
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 6.2e-27 124.4 126 59.5
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 1.4e-26 123.2 101 67.3
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 1.8e-26 122.9 121 59.5
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.8e-26 122.9 121 59.5
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 2.4e-26 122.5 119 59.7
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.4e-26 122.5 128 57.0
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 3.1e-26 122.1 125 58.4
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 3.1e-26 122.1 126 58.7
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 4.0e-26 121.7 124 60.5
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 4.0e-26 121.7 128 59.4
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 4.0e-26 121.7 121 61.2
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 4.0e-26 121.7 125 56.0
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 6.8e-26 120.9 127 58.3
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 1.2e-25 120.2 126 57.9
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.5e-25 119.8 126 57.9
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 2.0e-25 119.4 123 56.1
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 2.0e-25 119.4 114 60.5
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 2.6e-25 119.0 126 57.9
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 3.4e-25 118.6 124 54.8
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.4e-25 118.6 126 58.7
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 4.4e-25 118.2 126 57.1
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 5.8e-25 117.9 124 60.5
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.3e-24 116.7 123 55.3
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.7e-24 116.3 127 59.1
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-24 115.5 101 63.4
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 2.9e-24 115.5 125 57.6
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 3.8e-24 115.2 126 58.7
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 6.4e-24 114.4 124 51.6
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 6.4e-24 114.4 125 55.2
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 8.4e-24 114.0 131 53.4
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.4e-23 113.2 125 52.8
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 1.9e-23 112.8 126 57.9
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.9e-23 112.8 129 55.0
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 2.4e-23 112.5 126 54.0
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 2.4e-23 112.5 124 58.9
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 4.2e-23 111.7 125 56.8
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 5.4e-23 111.3 126 54.0
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 7.1e-23 110.9 128 57.0
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 7.1e-23 110.9 128 57.0
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 7.1e-23 110.9 105 59.0
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 1.2e-22 110.2 124 55.6
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 1.6e-22 109.8 124 55.6
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 2.1e-22 109.4 128 56.2
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 2.1e-22 109.4 128 56.2
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 2.1e-22 109.4 128 56.2
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.5e-22 108.6 109 56.9
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 1.3e-21 106.7 129 55.0
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 1.3e-21 106.7 126 56.3
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.7e-21 106.3 129 54.3
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 3.9e-21 105.1 126 51.6
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 8.7e-21 104.0 128 52.3
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 8.7e-21 104.0 124 51.6
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.9e-20 102.8 120 53.3
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 7.3e-20 100.9 131 53.4
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 4.0e-18 95.1 119 50.4
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 1.4e-15 86.7 73 64.4
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 1.9e-15 86.3 124 47.6
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 3.5e-14 82.0 67 70.1
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 7.9e-14 80.9 106 51.9
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 2.3e-13 79.3 133 41.4
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 2.3e-13 79.3 53 83.0
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 2.3e-13 79.3 127 43.3
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 2.3e-13 79.3 127 39.4
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 2.3e-13 79.3 127 41.7
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 8.7e-13 77.4 119 43.7
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 1.4e-10 70.1 124 44.4
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 9.0e-10 67.4 127 37.0
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 4.5e-09 65.1 109 45.9
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 5.8e-09 64.7 71 53.5


User provided reference genes

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