Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 1.7e-41 172.2 83 100.0
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 3.6e-23 111.3 83 72.3
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 1.4e-22 109.4 81 67.9
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 1.4e-22 109.4 83 68.7
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 6.7e-22 107.1 83 69.9
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 8.8e-22 106.7 83 72.3
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 1.5e-21 105.9 83 66.3
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 1.5e-21 105.9 82 69.5
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 5.7e-21 104.0 83 68.7
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 1.7e-20 102.4 83 66.3
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 1.7e-20 102.4 83 71.1
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 6.3e-20 100.5 81 69.1
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 8.2e-20 100.1 83 63.9
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 8.2e-20 100.1 81 65.4
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 8.2e-20 100.1 82 67.1
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 8.2e-20 100.1 83 66.3
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 1.1e-19 99.8 84 64.3
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 1.4e-19 99.4 82 67.1
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.4e-19 99.4 74 70.3
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 3.1e-19 98.2 81 67.9
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 4.1e-19 97.8 81 67.9
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 5.3e-19 97.4 81 64.2
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.2e-18 96.3 82 67.1
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 1.2e-18 96.3 83 65.1
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 1.2e-18 96.3 75 65.3
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 2.0e-18 95.5 82 67.1
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 2.7e-18 95.1 75 66.7
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 2.7e-18 95.1 79 64.6
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 2.7e-18 95.1 79 64.6
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 3.5e-18 94.7 81 63.0
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 3.5e-18 94.7 82 64.6
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 4.5e-18 94.4 74 66.2
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 4.5e-18 94.4 84 65.5
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 5.9e-18 94.0 83 62.7
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 1.3e-17 92.8 80 62.5
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 1.7e-17 92.4 80 60.0
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 1.7e-17 92.4 83 61.4
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.7e-17 92.4 81 61.7
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.7e-17 92.4 74 66.2
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 2.2e-17 92.0 83 61.4
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 2.2e-17 92.0 82 65.9
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 2.2e-17 92.0 84 64.3
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 2.2e-17 92.0 81 61.7
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.9e-17 91.7 74 68.9
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 3.8e-17 91.3 75 64.0
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 3.8e-17 91.3 74 66.2
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 5.0e-17 90.9 83 60.2
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 6.5e-17 90.5 81 65.4
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 6.5e-17 90.5 81 65.4
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 6.5e-17 90.5 81 65.4
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 6.5e-17 90.5 84 60.7
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 8.5e-17 90.1 83 65.1
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 1.1e-16 89.7 85 62.4
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.5e-16 89.4 81 65.4
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 1.9e-16 89.0 70 64.3
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 3.2e-16 88.2 74 60.8
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 5.5e-16 87.4 83 59.0
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 5.5e-16 87.4 77 62.3
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 5.5e-16 87.4 83 60.2
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 9.4e-16 86.7 74 62.2
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 1.2e-15 86.3 87 59.8
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 1.6e-15 85.9 81 59.3
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.6e-15 85.9 74 60.8
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 2.7e-15 85.1 75 60.0
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 2.7e-15 85.1 75 58.7
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 2.7e-15 85.1 75 60.0
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 2.7e-15 85.1 73 64.4
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.7e-15 85.1 75 61.3
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 2.7e-15 85.1 75 61.3
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 3.6e-15 84.7 75 61.3
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 3.6e-15 84.7 75 61.3
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 6.1e-15 84.0 81 54.3
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 8.0e-15 83.6 75 58.7
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 8.0e-15 83.6 75 58.7
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 8.0e-15 83.6 75 58.7
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 8.0e-15 83.6 75 58.7
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 8.0e-15 83.6 75 58.7
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 8.0e-15 83.6 72 65.3
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 1.0e-14 83.2 80 58.8
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 1.4e-14 82.8 89 58.4
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 1.4e-14 82.8 92 57.6
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 1.4e-14 82.8 92 57.6
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.4e-14 82.8 75 58.7
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.4e-14 82.8 81 51.9
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.8e-14 82.4 81 54.3
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.8e-14 82.4 75 58.7
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 1.8e-14 82.4 75 57.3
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 2.3e-14 82.0 81 55.6
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 3.0e-14 81.6 75 53.3
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 3.0e-14 81.6 92 56.5
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 3.0e-14 81.6 92 56.5
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 3.0e-14 81.6 92 56.5
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 3.0e-14 81.6 78 62.8
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 3.0e-14 81.6 75 57.3
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 4.0e-14 81.3 75 57.3
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 4.0e-14 81.3 75 57.3
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 4.0e-14 81.3 75 57.3
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 4.0e-14 81.3 81 55.6
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 5.2e-14 80.9 75 56.0
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 5.2e-14 80.9 75 56.0
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 5.2e-14 80.9 75 56.0
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 5.2e-14 80.9 78 59.0
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 5.2e-14 80.9 77 59.7
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 6.8e-14 80.5 80 57.5
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 6.8e-14 80.5 75 57.3
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 6.8e-14 80.5 77 59.7
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 8.8e-14 80.1 76 60.5
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 8.8e-14 80.1 77 59.7
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 8.8e-14 80.1 75 56.0
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.2e-13 79.7 76 60.5
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.5e-13 79.3 77 59.7
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.5e-13 79.3 77 59.7
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 1.5e-13 79.3 73 58.9
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 1.5e-13 79.3 75 64.0
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 2.0e-13 79.0 76 55.3
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.6e-13 78.6 81 51.9
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 4.4e-13 77.8 76 57.9
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 5.7e-13 77.4 77 58.4
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 5.7e-13 77.4 77 58.4
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 5.7e-13 77.4 85 54.1
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 7.5e-13 77.0 77 58.4
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 7.5e-13 77.0 77 58.4
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 7.5e-13 77.0 77 58.4
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 7.5e-13 77.0 77 58.4
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 1.7e-12 75.9 75 57.3
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 6.3e-12 73.9 101 48.5
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 6.3e-12 73.9 63 63.5
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.1e-11 73.2 83 49.4
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 2.4e-11 72.0 74 56.8
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 3.1e-11 71.6 74 54.1
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 4.1e-11 71.2 71 59.2
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 5.4e-11 70.9 79 49.4
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 1.2e-10 69.7 83 49.4
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 2.0e-10 68.9 73 49.3
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 2.0e-10 68.9 74 58.1
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 2.0e-10 68.9 73 57.5
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 3.5e-10 68.2 79 49.4
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 4.5e-10 67.8 72 56.9
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 4.5e-10 67.8 70 60.0
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 7.7e-10 67.0 85 49.4
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.3e-09 66.2 83 44.6
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 1.7e-09 65.9 79 46.8
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 1.7e-09 65.9 83 44.6
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 2.9e-09 65.1 78 46.2
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 8.5e-09 63.5 76 47.4
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.2e-08 61.6 74 55.4
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.6e-07 58.2 73 53.4
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 3.0e-06 55.1 77 44.2
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 5.2e-06 54.3 62 51.6


User provided reference genes

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