Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 8.9e-262 906.4 445 100.0
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 2.6e-221 771.9 445 82.9
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 9.9e-221 770.0 445 82.0
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 2.2e-220 768.8 445 82.2
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 3.8e-220 768.1 445 82.9
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 7.1e-219 763.8 445 81.6
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.2e-218 763.1 442 81.0
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 7.9e-218 760.4 445 81.3
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 3.0e-217 758.4 441 81.6
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 6.7e-217 757.3 441 81.6
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 6.7e-217 757.3 441 82.3
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 7.4e-216 753.8 443 81.0
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 3.7e-215 751.5 445 80.7
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.7e-215 751.5 445 80.2
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 3.7e-215 751.5 445 80.0
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 9.0e-214 746.9 474 77.2
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 9.9e-213 743.4 445 79.8
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 1.7e-212 742.7 445 80.0
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 2.9e-212 741.9 446 79.4
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 4.9e-212 741.1 443 79.5
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 6.4e-212 740.7 445 79.6
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 3.2e-211 738.4 445 78.0
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 3.2e-211 738.4 445 80.9
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 4.2e-211 738.0 443 77.9
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 5.5e-211 737.6 445 78.9
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 7.1e-211 737.3 443 79.0
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 9.3e-211 736.9 444 78.6
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 4.6e-210 734.6 445 77.5
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 5.1e-209 731.1 446 77.4
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 5.1e-209 731.1 454 77.5
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 1.5e-208 729.6 445 79.1
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 3.3e-208 728.4 441 76.9
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.6e-207 726.1 440 78.4
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 4.8e-207 724.5 440 80.0
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 6.2e-207 724.2 445 77.5
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 1.4e-206 723.0 441 77.3
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 1.2e-205 719.9 445 79.3
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 4.5e-205 718.0 447 78.7
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 5.8e-205 717.6 443 75.8
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 1.3e-204 716.5 441 77.3
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 2.9e-204 715.3 445 77.8
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 4.9e-204 714.5 449 78.0
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 4.9e-204 714.5 439 77.9
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 6.5e-204 714.1 442 78.5
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 1.4e-203 713.0 445 77.3
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 7.1e-203 710.7 445 75.5
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 1.6e-202 709.5 445 75.1
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 1.6e-202 709.5 446 76.0
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.3e-201 705.7 437 78.7
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.9e-201 704.9 445 74.8
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 7.4e-200 700.7 440 74.5
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 2.8e-199 698.7 433 75.5
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.4e-198 696.4 447 74.3
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.2e-197 693.3 447 76.3
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.6e-197 692.2 437 77.6
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 2.9e-196 688.7 471 72.8
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 4.2e-195 684.9 466 70.8
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 6.1e-194 681.0 407 78.6
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 1.8e-193 679.5 446 72.4
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 1.8e-193 679.5 445 72.4
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 6.7e-193 677.6 439 75.6
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 4.3e-192 674.9 443 73.1
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.8e-190 669.5 448 71.9
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 3.1e-190 668.7 445 72.4
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 2.6e-189 665.6 451 71.2
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 2.9e-188 662.1 442 71.9
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 3.8e-188 661.8 442 72.4
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 1.6e-186 656.4 422 76.5
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.1e-179 633.6 416 74.5
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 2.5e-179 632.5 447 71.1
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 5.2e-177 624.8 361 80.1
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.0e-176 622.9 468 68.8
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 2.0e-176 622.9 422 73.0
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 4.8e-175 618.2 411 72.3
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 2.2e-172 609.4 445 68.8
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 5.5e-171 604.7 435 67.6
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 3.6e-170 602.1 345 80.0
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 8.0e-170 600.9 654 50.9
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.5e-168 596.7 387 73.9
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 3.3e-168 595.5 451 66.7
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 9.7e-168 594.0 387 73.6
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 6.5e-164 581.3 383 71.8
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 5.4e-158 561.6 353 77.1
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 8.9e-153 544.3 354 73.2
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 9.8e-152 540.8 444 63.7
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 2.7e-149 532.7 445 60.7
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 2.3e-148 529.6 437 57.7
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 3.2e-142 509.2 450 60.2
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 1.1e-139 500.7 387 63.8
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 1.5e-139 500.4 434 59.0
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 1.5e-139 500.4 499 55.1
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 3.4e-136 489.2 444 57.0
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 6.4e-135 485.0 281 83.6
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 8.3e-135 484.6 285 81.1
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 1.4e-134 483.8 444 56.8
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 2.4e-134 483.0 380 66.1
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.2e-134 482.6 342 70.5
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 3.2e-134 482.6 285 81.4
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 5.4e-134 481.9 445 56.2
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 1.3e-132 477.2 285 80.7
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.5e-131 473.8 445 58.0
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 2.4e-126 456.4 283 77.0
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 2.1e-125 453.4 450 55.3
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 3.0e-124 449.5 372 57.8
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 2.6e-120 436.4 441 53.5
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.3e-114 417.5 286 72.7
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 1.8e-113 413.7 445 52.8
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 9.0e-113 411.4 448 46.4
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 9.0e-113 411.4 407 55.5
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.7e-108 397.1 287 67.2
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 2.3e-108 396.7 445 50.3
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 7.9e-101 371.7 422 51.2
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 2.5e-99 366.7 212 81.1
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.3e-98 364.4 212 80.7
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 2.5e-86 323.6 342 48.5
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.4e-72 276.6 172 77.9
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.4e-72 276.6 172 77.9
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.9e-70 270.8 163 79.1
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 6.1e-69 265.8 152 82.9
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 4.1e-65 253.1 152 75.0
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 7.7e-64 248.8 187 65.2
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 4.7e-53 213.0 124 79.0
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.4e-49 201.4 130 70.8
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 4.1e-49 199.9 127 73.2
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 3.5e-48 196.8 130 70.0
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 4.5e-48 196.4 105 97.1
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 8.5e-47 192.2 131 72.5
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 2.1e-45 187.6 257 39.3
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.3e-44 184.1 123 65.9
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 3.0e-44 183.7 177 55.9
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 6.3e-42 176.0 95 88.4
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.8e-33 147.9 104 64.4
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.5e-32 143.7 112 63.4
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.8e-29 134.0 84 71.4
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 1.2e-27 128.6 108 56.5
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.4e-17 95.1 69 71.0
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.9e-17 94.7 67 73.1
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 2.4e-17 94.4 102 52.0
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 5.4e-17 93.2 68 72.1
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.3e-14 84.0 45 84.4
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 7.3e-14 82.8 48 72.9
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 9.9e-11 72.4 31 93.5


User provided reference genes

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