Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 7.0e-220 766.9 373 100.0
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.8e-146 523.1 383 68.4
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 7.0e-143 511.1 379 65.7
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.0e-141 507.3 385 66.8
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.7e-141 506.5 369 68.0
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 8.5e-141 504.2 369 67.8
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 4.2e-140 501.9 369 67.5
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 7.2e-140 501.1 368 67.9
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.7e-139 499.2 369 67.2
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 3.6e-139 498.8 383 66.1
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 6.1e-139 498.0 353 69.1
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 1.4e-138 496.9 373 66.5
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.0e-137 493.0 357 66.7
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 5.7e-137 491.5 373 66.2
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.7e-136 490.0 360 67.8
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.1e-135 485.7 395 62.8
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 4.5e-134 481.9 354 66.9
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.7e-133 479.9 370 63.2
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 3.0e-130 469.2 365 64.4
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 4.0e-130 468.8 378 62.7
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.7e-128 463.4 378 61.9
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 3.7e-128 462.2 371 63.9
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.4e-127 460.3 366 61.5
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 1.8e-127 459.9 375 61.3
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 5.4e-127 458.4 379 62.0
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.0e-126 456.4 381 63.5
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 3.5e-126 455.7 368 62.2
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 6.5e-125 451.4 371 63.6
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 4.2e-124 448.7 364 62.1
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 5.5e-124 448.4 375 59.5
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 9.5e-124 447.6 369 61.0
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 2.1e-123 446.4 360 62.8
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 2.1e-123 446.4 339 65.2
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.8e-123 446.0 380 62.6
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.0e-122 444.1 379 58.8
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 3.0e-122 442.6 370 60.8
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 3.0e-122 442.6 370 61.1
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 8.9e-122 441.0 362 59.7
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 1.2e-121 440.7 360 61.7
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 2.6e-121 439.5 370 60.5
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 3.4e-121 439.1 364 61.5
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.3e-120 437.2 363 60.3
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 1.4e-119 433.7 365 59.2
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 1.8e-119 433.3 370 59.7
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 7.0e-119 431.4 365 58.6
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 9.2e-119 431.0 358 59.5
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 5.9e-118 428.3 369 60.4
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 3.8e-117 425.6 343 62.4
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 1.5e-116 423.7 371 59.6
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 5.6e-116 421.8 364 61.0
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 1.6e-115 420.2 327 61.8
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 6.8e-114 414.8 338 62.1
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 1.2e-113 414.1 353 60.6
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 2.0e-113 413.3 336 61.6
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 2.6e-113 412.9 323 62.5
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 2.6e-113 412.9 330 62.7
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 4.4e-113 412.1 434 51.2
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 1.3e-112 410.6 323 61.9
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 1.7e-112 410.2 358 58.9
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 3.7e-112 409.1 336 61.3
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 1.1e-111 407.5 331 61.0
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 4.1e-111 405.6 355 57.7
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 4.1e-111 405.6 323 61.9
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 4.1e-111 405.6 361 57.6
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 7.0e-111 404.8 328 61.0
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 1.2e-110 404.1 316 62.7
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.7e-109 400.2 364 57.1
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 2.3e-109 399.8 322 61.8
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 3.0e-109 399.4 376 56.1
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 3.9e-109 399.1 320 62.2
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 5.0e-109 398.7 383 55.4
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 6.6e-109 398.3 380 55.0
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 8.6e-109 397.9 363 55.6
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 8.6e-109 397.9 338 58.9
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 1.5e-108 397.1 332 59.6
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 1.5e-108 397.1 384 54.7
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 1.9e-108 396.7 371 56.3
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 2.5e-108 396.4 377 55.2
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 3.3e-108 396.0 378 56.6
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 4.3e-108 395.6 333 60.7
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 4.3e-108 395.6 352 57.4
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.2e-107 394.0 375 56.5
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 2.8e-107 392.9 369 57.2
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 5.2e-106 388.7 383 54.3
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 5.2e-106 388.7 375 56.0
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 8.9e-106 387.9 271 69.0
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 8.9e-106 387.9 329 60.2
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 2.0e-105 386.7 381 54.9
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 3.4e-105 386.0 317 61.5
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 4.4e-105 385.6 320 61.9
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 1.7e-104 383.6 276 68.5
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 2.2e-104 383.3 328 60.4
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 3.7e-104 382.5 317 61.2
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 3.7e-104 382.5 320 60.9
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 1.9e-103 380.2 340 58.5
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.4e-103 379.8 272 67.6
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 3.2e-103 379.4 378 54.2
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 2.7e-102 376.3 288 64.6
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 4.6e-102 375.6 272 67.3
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 4.3e-100 369.0 317 60.3
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 4.3e-100 369.0 380 52.9
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 3.6e-99 365.9 363 54.0
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 6.8e-98 361.7 299 59.2
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.6e-94 350.5 329 55.9
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 1.6e-94 350.5 325 55.7
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 2.5e-92 343.2 290 60.0
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 4.3e-92 342.4 272 61.8
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 2.0e-89 333.6 326 55.2
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 5.8e-89 332.0 323 52.3
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 2.2e-88 330.1 320 53.1
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 4.4e-81 305.8 330 49.1
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 3.8e-80 302.8 284 54.6
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 9.3e-79 298.1 295 51.9
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 2.3e-77 293.5 262 58.0
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.3e-69 267.7 194 65.5
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 3.3e-68 263.1 294 46.9
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.2e-65 254.6 287 46.7
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 2.9e-64 250.0 279 46.6
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 6.0e-62 242.3 286 45.1
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 1.0e-61 241.5 272 47.8
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.3e-61 241.1 269 46.1
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 1.8e-61 240.7 240 53.3
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 5.3e-58 229.2 292 44.2
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.7e-48 197.6 164 62.2
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 3.0e-45 186.8 173 55.5
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 1.7e-43 181.0 139 65.5
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 4.2e-39 166.4 126 65.1
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 9.7e-28 128.6 95 64.2
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.2e-22 111.7 104 56.7
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 6.7e-21 105.9 170 40.6
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 2.8e-19 100.5 82 62.2
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 3.1e-18 97.1 123 47.2
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 3.1e-18 97.1 123 47.2
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 2.5e-15 87.4 74 62.2
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 4.2e-15 86.7 82 56.1
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 5.7e-12 76.3 114 40.4
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.7e-11 73.6 71 50.7
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 2.0e-09 67.8 58 62.1
Aqoxy6G01151 Aquilegia oxysepala HOM05D004293 ORTHO05D005044 5.5e-07 59.7 150 26.7
unitig_37.g12996 Utricularia gibba HOM05D004293 ORTHO05D005044 1.6e-06 58.2 70 40.0
SEGI_26481 Sequoiadendron giganteum HOM05D004293 ORTHO05D005044 4.7e-06 56.6 156 28.8
Gohir.D05G195900 Gossypium hirsutum HOM05D004293 ORTHO05D005044 6.1e-06 56.2 150 26.7
HanXRQChr05g0151741 Helianthus annuus HOM05D004293 ORTHO05D005044 6.1e-06 56.2 93 37.6
Lsat_1_v5_gn_5_27761 Lactuca sativa HOM05D004293 ORTHO05D005044 8.0e-06 55.8 93 32.3


User provided reference genes

Program Settings