Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 2.2e-48 195.3 97 100.0
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.5e-41 172.6 97 86.6
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 7.1e-39 163.7 97 81.4
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 7.8e-38 160.2 105 78.1
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 8.7e-37 156.8 99 76.8
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.5e-36 156.0 99 77.8
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.9e-36 155.6 99 77.8
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 4.8e-35 151.0 99 75.8
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 6.2e-35 150.6 99 74.7
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 8.1e-35 150.2 92 76.1
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 1.1e-34 149.8 97 75.3
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 2.4e-34 148.7 94 75.5
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 4.0e-34 147.9 97 71.1
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 6.9e-34 147.1 97 74.2
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 6.9e-34 147.1 93 75.3
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 9.0e-34 146.7 96 71.9
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 2.0e-33 145.6 88 76.1
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 2.0e-33 145.6 92 73.9
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 2.6e-33 145.2 92 75.0
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 3.4e-33 144.8 94 72.3
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 5.8e-33 144.1 96 71.9
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 7.6e-33 143.7 93 75.3
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 9.9e-33 143.3 87 73.6
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 1.3e-32 142.9 89 75.3
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.7e-32 142.5 93 72.0
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.8e-32 141.4 93 71.0
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 4.9e-32 141.0 93 71.0
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 4.9e-32 141.0 96 71.9
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 6.4e-32 140.6 93 68.8
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 6.4e-32 140.6 93 71.0
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.9e-31 139.0 93 71.0
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 3.2e-31 138.3 90 74.4
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 5.4e-31 137.5 98 68.4
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 5.4e-31 137.5 92 67.4
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.2e-30 136.3 99 66.7
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.6e-30 136.0 93 73.1
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 2.1e-30 135.6 92 66.3
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 2.7e-30 135.2 95 69.5
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 6.0e-30 134.0 96 68.8
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 7.9e-30 133.7 91 67.0
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 7.9e-30 133.7 87 73.6
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.3e-29 132.9 83 75.9
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 1.8e-29 132.5 88 68.2
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.8e-29 132.5 93 67.7
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 1.8e-29 132.5 97 69.1
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.3e-29 132.1 88 73.9
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 2.3e-29 132.1 87 71.3
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.3e-29 132.1 98 69.4
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 3.9e-29 131.3 82 72.0
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 3.9e-29 131.3 88 67.0
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 5.1e-29 131.0 98 68.4
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 6.7e-29 130.6 88 72.7
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 8.7e-29 130.2 88 76.1
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.1e-28 129.8 81 72.8
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.1e-28 129.8 81 72.8
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.5e-28 129.4 90 72.2
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 1.5e-28 129.4 89 70.8
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.9e-28 129.0 93 68.8
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 1.9e-28 129.0 110 60.9
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 1.9e-28 129.0 80 76.2
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 1.9e-28 129.0 80 76.2
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.5e-28 128.6 103 66.0
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 2.5e-28 128.6 82 73.2
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 4.3e-28 127.9 99 63.6
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 4.3e-28 127.9 91 68.1
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 5.6e-28 127.5 102 64.7
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 5.6e-28 127.5 97 68.0
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 5.6e-28 127.5 95 65.3
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 5.6e-28 127.5 92 69.6
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 1.3e-27 126.3 81 71.6
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.6e-27 125.9 86 67.4
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 3.7e-27 124.8 72 81.9
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 3.7e-27 124.8 95 64.2
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 4.8e-27 124.4 88 63.6
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 4.8e-27 124.4 88 63.6
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 4.8e-27 124.4 76 77.6
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 6.2e-27 124.0 91 67.0
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 6.2e-27 124.0 100 64.0
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 8.1e-27 123.6 80 73.8
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 1.1e-26 123.2 87 66.7
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.1e-26 123.2 89 70.8
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.1e-26 123.2 97 67.0
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.4e-26 122.9 87 67.8
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.4e-26 122.9 87 67.8
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.4e-26 122.9 93 63.4
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 1.8e-26 122.5 93 64.5
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 1.8e-26 122.5 93 64.5
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 2.4e-26 122.1 92 60.9
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 4.0e-26 121.3 89 69.7
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 4.0e-26 121.3 95 65.3
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 4.0e-26 121.3 92 64.1
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 5.3e-26 120.9 93 65.6
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 5.3e-26 120.9 92 63.0
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 6.9e-26 120.6 89 68.5
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 9.0e-26 120.2 92 64.1
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 9.0e-26 120.2 82 65.9
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 9.0e-26 120.2 82 65.9
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 1.5e-25 119.4 92 63.0
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.0e-25 119.0 79 68.4
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 5.8e-25 117.5 84 72.6
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 1.3e-24 116.3 95 58.9
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 2.9e-24 115.2 77 68.8
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 2.9e-24 115.2 77 68.8
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 3.8e-24 114.8 92 58.7
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 4.9e-24 114.4 88 67.0
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 8.4e-24 113.6 87 66.7
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 1.1e-23 113.2 83 63.9
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.1e-23 113.2 80 65.0
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 1.4e-23 112.8 78 73.1
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 1.4e-23 112.8 72 75.0
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.9e-23 112.5 90 63.3
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 2.4e-23 112.1 79 64.6
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 4.2e-23 111.3 76 71.1
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 5.5e-23 110.9 71 71.8
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 5.5e-23 110.9 81 67.9
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 5.5e-23 110.9 91 58.2
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 7.1e-23 110.5 69 71.0
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 7.1e-23 110.5 87 65.5
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 2.7e-22 108.6 81 66.7
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 2.7e-22 108.6 81 66.7
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 3.5e-22 108.2 64 76.6
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 4.6e-22 107.8 81 67.9
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 6.0e-22 107.5 88 56.8
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 1.0e-21 106.7 80 61.2
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.3e-21 106.3 69 71.0
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.8e-21 105.9 77 62.3
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 2.3e-21 105.5 72 68.1
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.0e-21 105.1 68 73.5
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.5e-20 102.8 95 55.8
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 2.5e-20 102.1 73 69.9
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 3.3e-20 101.7 66 74.2
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 9.6e-20 100.1 66 72.7
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 2.1e-19 99.0 86 57.0
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.1e-18 96.7 82 59.8
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.4e-18 96.3 75 58.7
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.2e-17 93.2 99 47.5
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 2.6e-17 92.0 81 58.0
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 2.6e-17 92.0 81 58.0
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.6e-17 92.0 68 64.7
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.5e-17 91.3 102 50.0
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.7e-16 89.4 62 62.9
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 2.2e-16 89.0 63 63.5
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 2.9e-16 88.6 67 61.2
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.4e-15 86.3 61 65.6
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 9.3e-15 83.6 64 59.4
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 9.3e-15 83.6 56 66.1
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.1e-14 82.4 56 64.3
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 7.9e-14 80.5 56 62.5
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.0e-13 80.1 60 60.0
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.8e-13 79.3 115 41.7
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.3e-12 75.1 63 49.2
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 9.7e-12 73.6 56 58.9
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.6e-11 72.8 44 70.5
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 3.1e-10 68.6 42 73.8
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 3.8e-08 61.6 60 46.7
GSVIVG01015950001 Vitis vinifera HOM05D004571 ORTHO05D005334 9.3e-07 57.0 45 55.6


User provided reference genes

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