Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3555 Cannabis sativa HOM05D011076 ORTHO05D011884 2.7e-70 268.5 127 100.0
CANSAT11G0592 Cannabis sativa HOM05D011076 ORTHO05D011884 1.7e-69 265.8 127 99.2
CANSAT54G1402 Cannabis sativa HOM05D011076 ORTHO05D011884 1.8e-58 229.2 110 97.3
CANSAT80G2746 Cannabis sativa HOM05D013932 ORTHO05D011884 1.2e-33 146.7 109 61.5
CANSAT11G0678 Cannabis sativa HOM05D011076 ORTHO05D011884 7.9e-22 107.5 116 44.8
CANSAT25G0405 Cannabis sativa HOM05D011076 ORTHO05D011884 4.3e-20 101.7 116 42.2
CANSAT11G2561 Cannabis sativa HOM05D011076 ORTHO05D011884 1.3e-19 100.1 115 40.0
CANSAT25G3669 Cannabis sativa HOM05D011076 ORTHO05D011884 2.8e-19 99.0 116 41.4
CANSAT80G0804 Cannabis sativa HOM05D011076 ORTHO05D011884 3.7e-19 98.6 115 40.0
CANSAT11G0872 Cannabis sativa HOM05D011076 ORTHO05D011884 1.8e-18 96.3 110 40.9
CANSAT54G0373 Cannabis sativa HOM05D011076 ORTHO05D011884 1.7e-16 89.7 110 40.0
CANSAT56G2878 Cannabis sativa HOM05D000539 ORTHO05D000233 3.8e-16 88.6 114 36.8
CANSAT54G3025 Cannabis sativa HOM05D000140 ORTHO05D000087 5.0e-16 88.2 113 36.3
CANSAT01G2896 Cannabis sativa HOM05D013932 ORTHO05D011884 7.2e-15 84.3 71 52.1
CANSAT35G1642 Cannabis sativa HOM05D000107 ORTHO05D000062 6.1e-14 81.3 59 64.4
CANSAT80G0998 Cannabis sativa HOM05D013932 ORTHO05D011884 3.9e-13 78.6 36 97.2
Rhsim02G0146100 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.9e-12 76.3 113 35.4
Atru.chr1.522 Acer truncatum HOM05D000539 ORTHO05D000592 3.3e-12 75.5 114 32.5
Rhsim08G0058500 Rhododendron simsii HOM05D000539 ORTHO05D000592 4.3e-12 75.1 120 30.8
Rhsim08G0058700 Rhododendron simsii HOM05D000539 ORTHO05D000592 4.3e-12 75.1 120 30.8
Rhsim01G0127800 Rhododendron simsii HOM05D000539 ORTHO05D000233 7.4e-12 74.3 122 33.6
Rhsim09G0096300 Rhododendron simsii HOM05D000539 ORTHO05D000233 7.4e-12 74.3 122 33.6
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.4e-12 74.3 111 33.3
CANSAT25G1419 Cannabis sativa HOM05D011076 ORTHO05D011884 1.3e-11 73.6 72 45.8
EL10Ac5g12071 Beta vulgaris HOM05D007938 ORTHO05D009929 2.2e-11 72.8 119 34.5
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 2.2e-11 72.8 114 30.7
Prupe.1G183700 Prunus persica HOM05D000539 ORTHO05D000592 3.7e-11 72.0 118 31.4
RcHm_v2.0_Chr1g0318241 Rosa chinensis HOM05D000539 ORTHO05D000592 8.2e-11 70.9 115 30.4
SalBow6G4879 Salvia bowleyana HOM05D000539 ORTHO05D000592 1.1e-10 70.5 117 31.6
Prupe.1G193900 Prunus persica HOM05D000539 ORTHO05D000592 1.4e-10 70.1 121 30.6
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 1.4e-10 70.1 115 29.6
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 1.4e-10 70.1 115 29.6
Prupe.1G174000 Prunus persica HOM05D000539 ORTHO05D000592 1.8e-10 69.7 121 30.6
Prupe.5G062900 Prunus persica HOM05D000539 ORTHO05D000592 3.1e-10 68.9 118 30.5
RcHm_v2.0_Chr4g0390571 Rosa chinensis HOM05D000539 ORTHO05D000592 4.1e-10 68.6 115 28.7
SalBow7G1279 Salvia bowleyana HOM05D000539 ORTHO05D000592 5.3e-10 68.2 117 31.6
Prupe.3G118800 Prunus persica HOM05D000539 ORTHO05D000592 9.1e-10 67.4 128 29.7
Prupe.4G261200 Prunus persica HOM05D000539 ORTHO05D000592 9.1e-10 67.4 118 30.5
Atru.chr1.738 Acer truncatum HOM05D000539 ORTHO05D000592 1.2e-09 67.0 82 37.8
CANSAT80G0221 Cannabis sativa HOM05D000539 ORTHO05D000233 1.2e-09 67.0 111 29.7
CANSAT21G0837 Cannabis sativa HOM05D000539 ORTHO05D000592 1.5e-09 66.6 116 27.6
Prupe.1G028600 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-09 66.6 128 29.7
Prupe.1G036300 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-09 66.6 128 29.7
Prupe.2G053400 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-09 66.6 128 29.7
Prupe.2G062000 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-09 66.6 128 29.7
Prupe.2G089500 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-09 66.6 128 29.7
Prupe.2G157500 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-09 66.6 128 29.7
Prupe.6G142900 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-09 66.6 128 29.7
Prupe.8G054500 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-09 66.6 128 29.7
ECA236G3736 Erigeron canadensis HOM05D000539 ORTHO05D000233 2.0e-09 66.2 115 28.7
Prupe.1G185000 Prunus persica HOM05D000539 ORTHO05D000592 2.0e-09 66.2 128 29.7
Prupe.3G119600 Prunus persica HOM05D000539 ORTHO05D000592 2.0e-09 66.2 128 29.7
RcHm_v2.0_Chr1g0355551 Rosa chinensis HOM05D000539 ORTHO05D000592 2.0e-09 66.2 122 27.9
Ciclev10012877m.g Citrus clementina HOM05D000539 ORTHO05D000592 2.6e-09 65.9 115 24.3
Lj2g0011920 Lotus japonicus HOM05D002644 ORTHO05D003267 2.6e-09 65.9 121 27.3
Prupe.1G199400 Prunus persica HOM05D000539 ORTHO05D000592 2.6e-09 65.9 128 29.7
Prupe.1G397800 Prunus persica HOM05D000539 ORTHO05D000592 2.6e-09 65.9 128 29.7
Prupe.2G011100 Prunus persica HOM05D000539 ORTHO05D000592 2.6e-09 65.9 128 28.9
Prupe.3G153900 Prunus persica HOM05D000539 ORTHO05D000592 2.6e-09 65.9 128 28.9
Prupe.5G051700 Prunus persica HOM05D000539 ORTHO05D000592 2.6e-09 65.9 128 29.7
Prupe.6G180100 Prunus persica HOM05D000539 ORTHO05D000592 2.6e-09 65.9 128 29.7
Prupe.7G008900 Prunus persica HOM05D000539 ORTHO05D000592 2.6e-09 65.9 128 28.9
Prupe.8G059600 Prunus persica HOM05D000539 ORTHO05D000592 2.6e-09 65.9 118 29.7
Prupe.2G155700 Prunus persica HOM05D000539 ORTHO05D000233 3.4e-09 65.5 128 28.9
Prupe.4G253500 Prunus persica HOM05D000539 ORTHO05D000592 3.4e-09 65.5 128 28.9
Prupe.7G029100 Prunus persica HOM05D000539 ORTHO05D000592 4.5e-09 65.1 128 28.9
Prupe.7G057400 Prunus persica HOM05D000539 ORTHO05D000592 4.5e-09 65.1 128 29.7
Ca_03880_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 5.9e-09 64.7 120 27.5
Prupe.4G092400 Prunus persica HOM05D000539 ORTHO05D000592 5.9e-09 64.7 118 29.7
vmacro04479 Vaccinium macrocarpon HOM05D000539 ORTHO05D000233 5.9e-09 64.7 112 28.6
Prupe.1G310400 Prunus persica HOM05D000539 ORTHO05D000592 7.7e-09 64.3 128 28.9
RhsimUnG0164900 Rhododendron simsii HOM05D000539 ORTHO05D000233 7.7e-09 64.3 122 31.1
RcHm_v2.0_Chr6g0261571 Rosa chinensis HOM05D000539 ORTHO05D000592 1.3e-08 63.5 111 32.4
Ca_12950_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.7e-08 63.2 120 26.7
ECA240G4466 Erigeron canadensis HOM05D000539 ORTHO05D000233 1.7e-08 63.2 111 26.1
Prupe.1G204500 Prunus persica HOM05D000539 ORTHO05D000592 1.7e-08 63.2 82 34.1
Prupe.5G060800 Prunus persica HOM05D000539 ORTHO05D000592 1.7e-08 63.2 124 29.8
RcHm_v2.0_Chr6g0271071 Rosa chinensis HOM05D000539 ORTHO05D000592 2.9e-08 62.4 120 29.2
Ca_19281_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.8e-08 62.0 120 25.0
Ca_23926_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.8e-08 62.0 120 25.0
MELO3C034193.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.8e-08 62.0 124 26.6
FvH4_2g18191 Fragaria vesca HOM05D000539 ORTHO05D000233 3.8e-08 62.0 119 26.1
CANSAT54G1430 Cannabis sativa HOM05D000539 ORTHO05D000592 5.0e-08 61.6 114 27.2
Ca_19885_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 5.0e-08 61.6 120 27.5
Ca_03334_v3 Cicer arietinum L. HOM05D002644 ORTHO05D000592 6.5e-08 61.2 120 25.0
Prupe.4G253400 Prunus persica HOM05D000539 ORTHO05D000592 6.5e-08 61.2 82 34.1
Rhsim02G0154800 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.5e-08 61.2 114 29.8
Lsat_1_v5_gn_4_34001 Lactuca sativa HOM05D000539 ORTHO05D000592 8.5e-08 60.8 115 25.2
Prupe.1G130900 Prunus persica HOM05D000539 ORTHO05D000233 8.5e-08 60.8 101 31.7
Prupe.2G045600 Prunus persica HOM05D000539 ORTHO05D000592 8.5e-08 60.8 128 28.9
Ca_04791_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.1e-07 60.5 120 25.0
Ca_18593_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.1e-07 60.5 120 25.0
Ca_20463_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.1e-07 60.5 120 25.8
Ca_23902_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.1e-07 60.5 120 25.0
CANSAT35G0077 Cannabis sativa HOM05D000539 ORTHO05D000592 1.4e-07 60.1 126 27.8
CANSAT64G2767 Cannabis sativa HOM05D000539 ORTHO05D000592 1.4e-07 60.1 126 27.8
Sed0026544 Sechium edule HOM05D000539 ORTHO05D000592 1.4e-07 60.1 116 30.2
MELO3C031470.2 Cucumis melo HOM05D005049 ORTHO05D006032 1.9e-07 59.7 72 40.3
Ca_12022_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.5e-07 59.3 120 26.7
Ciclev10005682m.g Citrus clementina HOM05D000539 ORTHO05D000592 2.5e-07 59.3 108 24.1
MELO3C035055.2 Cucumis melo HOM05D000004 ORTHO05D000002 2.5e-07 59.3 115 27.0
Atru.chr1.1681 Acer truncatum HOM05D000539 ORTHO05D000592 3.2e-07 58.9 79 27.8
Prupe.1G055100 Prunus persica HOM05D000539 ORTHO05D000592 3.2e-07 58.9 95 32.6
Prupe.1G202700 Prunus persica HOM05D000539 ORTHO05D000592 3.2e-07 58.9 95 32.6
Prupe.2G088700 Prunus persica HOM05D000539 ORTHO05D000592 3.2e-07 58.9 95 32.6
Prupe.3G103000 Prunus persica HOM05D000539 ORTHO05D000592 3.2e-07 58.9 95 31.6
Prupe.3G129900 Prunus persica HOM05D000539 ORTHO05D000592 3.2e-07 58.9 82 34.1
Prupe.5G023300 Prunus persica HOM05D000539 ORTHO05D000592 3.2e-07 58.9 95 32.6
Ca_02759_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 4.2e-07 58.5 120 25.8
Ca_13592_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 4.2e-07 58.5 120 25.8
Prupe.1G237300 Prunus persica HOM05D000539 ORTHO05D000592 4.2e-07 58.5 82 34.1
Prupe.2G090400 Prunus persica HOM05D000539 ORTHO05D000592 4.2e-07 58.5 82 34.1
Prupe.2G094600 Prunus persica HOM05D000539 ORTHO05D000592 4.2e-07 58.5 82 34.1
Prupe.6G125300 Prunus persica HOM05D000539 ORTHO05D000592 4.2e-07 58.5 82 32.9
Prupe.7G036200 Prunus persica HOM05D000539 ORTHO05D000592 4.2e-07 58.5 82 34.1
FvH4_6g20174 Fragaria vesca HOM05D000539 ORTHO05D000592 5.5e-07 58.2 118 23.7
PSO541G5385 Papaver somniferum HOM05D000539 ORTHO05D000233 5.5e-07 58.2 115 28.7
Prupe.1G091800 Prunus persica HOM05D000539 ORTHO05D000592 5.5e-07 58.2 82 32.9
Prupe.5G062800 Prunus persica HOM05D000539 ORTHO05D000592 5.5e-07 58.2 82 32.9
Prupe.6G137200 Prunus persica HOM05D000539 ORTHO05D000592 5.5e-07 58.2 82 32.9
Prupe.6G200000 Prunus persica HOM05D000539 ORTHO05D000592 5.5e-07 58.2 82 34.1
Prupe.8G059300 Prunus persica HOM05D000539 ORTHO05D000592 5.5e-07 58.2 95 31.6
AUR62026574 Chenopodium quinoa HOM05D002644 ORTHO05D000233 7.2e-07 57.8 122 27.0
Ciclev10017703m.g Citrus clementina HOM05D000539 ORTHO05D000592 7.2e-07 57.8 88 26.1
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 7.2e-07 57.8 84 32.1
PSO675G7387 Papaver somniferum HOM05D000539 ORTHO05D000233 7.2e-07 57.8 115 28.7
Prupe.8G055800 Prunus persica HOM05D000539 ORTHO05D000592 7.2e-07 57.8 95 31.6
Ciclev10033503m.g Citrus clementina HOM05D000539 ORTHO05D000592 9.4e-07 57.4 88 26.1
MELO3C030161.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.4e-07 57.4 114 28.9
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 9.4e-07 57.4 124 25.8
Prupe.3G106000 Prunus persica HOM05D000539 ORTHO05D000592 9.4e-07 57.4 108 30.6
RcHm_v2.0_Chr5g0023941 Rosa chinensis HOM05D000539 ORTHO05D000592 9.4e-07 57.4 116 25.0
SalBow3G2933 Salvia bowleyana HOM05D000539 ORTHO05D000592 9.4e-07 57.4 117 24.8
Sed0024905 Sechium edule HOM05D000539 ORTHO05D000592 9.4e-07 57.4 116 29.3
Prupe.1G192500 Prunus persica HOM05D000539 ORTHO05D000592 1.2e-06 57.0 82 32.9
MELO3C033889.2 Cucumis melo HOM05D005049 ORTHO05D006032 1.6e-06 56.6 72 38.9
Aqoxy6G01916 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 2.1e-06 56.2 116 27.6
FvH4_2g11482 Fragaria vesca HOM05D000539 ORTHO05D000592 2.1e-06 56.2 120 29.2
HanXRQChr09g0262931 Helianthus annuus HOM05D000539 ORTHO05D000592 2.7e-06 55.8 114 26.3
Atru.chr7.1246 Acer truncatum HOM05D000539 ORTHO05D000592 3.6e-06 55.5 84 29.8
HanXRQChr10g0317561 Helianthus annuus HOM05D000539 ORTHO05D000592 3.6e-06 55.5 102 28.4
SGA_v2.0_scaffold191G40501 Striga asiatica HOM05D002644 ORTHO05D003267 3.6e-06 55.5 124 24.2
FAN22G1314 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.7e-06 55.1 125 27.2
HanXRQChr10g0286251 Helianthus annuus HOM05D011081 ORTHO05D000592 4.7e-06 55.1 61 41.0
Medtr2g092960 Medicago truncatula HOM05D007793 ORTHO05D010104 4.7e-06 55.1 108 25.0
HanXRQChr14g0441961 Helianthus annuus HOM05D000539 ORTHO05D000592 6.1e-06 54.7 114 26.3
PSO170G1580 Papaver somniferum HOM05D022837 ORTHO05D000592 6.1e-06 54.7 115 27.8
PSO455G0104 Papaver somniferum HOM05D022837 ORTHO05D000233 6.1e-06 54.7 115 28.7
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 6.1e-06 54.7 124 24.2
FAN12G3432 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.9e-06 54.3 119 28.6
Prupe.1G184100 Prunus persica HOM05D000539 ORTHO05D000592 7.9e-06 54.3 123 28.5
Prupe.4G198900 Prunus persica HOM05D000539 ORTHO05D000592 7.9e-06 54.3 82 31.7
Prupe.4G254700 Prunus persica HOM05D000539 ORTHO05D000233 7.9e-06 54.3 106 30.2


User provided reference genes

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