Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3449 Cannabis sativa HOM05D002370 ORTHO05D016147 3.0e-44 181.4 90 100.0
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.1e-38 162.9 84 95.2
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 1.1e-38 162.9 84 95.2
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 1.1e-38 162.9 84 95.2
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 2.5e-38 161.8 84 94.0
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 3.3e-38 161.4 84 94.0
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 3.3e-38 161.4 84 94.0
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 4.3e-38 161.0 84 94.0
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 4.3e-38 161.0 84 94.0
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 4.3e-38 161.0 84 94.0
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 4.3e-38 161.0 84 94.0
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 4.3e-38 161.0 84 94.0
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 5.6e-38 160.6 84 94.0
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 7.3e-38 160.2 84 92.9
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 9.5e-38 159.8 84 92.9
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 9.5e-38 159.8 84 92.9
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 9.5e-38 159.8 84 92.9
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 1.2e-37 159.5 84 92.9
Gohir.A01G009500 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.2e-37 159.5 84 92.9
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.2e-37 159.5 84 94.0
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 1.6e-37 159.1 84 92.9
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 2.1e-37 158.7 84 92.9
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 2.8e-37 158.3 84 92.9
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 2.8e-37 158.3 84 91.7
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 2.8e-37 158.3 84 92.9
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 4.7e-37 157.5 84 92.9
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 6.2e-37 157.1 84 91.7
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 6.2e-37 157.1 84 91.7
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 6.2e-37 157.1 84 91.7
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 8.0e-37 156.8 84 91.7
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 8.0e-37 156.8 84 91.7
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 8.0e-37 156.8 84 91.7
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 8.0e-37 156.8 84 91.7
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 8.0e-37 156.8 84 91.7
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 8.0e-37 156.8 84 91.7
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 8.0e-37 156.8 84 91.7
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 8.0e-37 156.8 84 90.5
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 8.0e-37 156.8 84 91.7
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 8.0e-37 156.8 84 91.7
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 8.0e-37 156.8 84 91.7
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 8.0e-37 156.8 84 90.5
Haze_10317 Corylus avellana HOM05D002370 ORTHO05D003878 1.1e-36 156.4 84 90.5
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.1e-36 156.4 84 90.5
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 1.4e-36 156.0 84 90.5
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.4e-36 156.0 84 91.7
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.4e-36 156.0 84 90.5
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 1.8e-36 155.6 84 90.5
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 1.8e-36 155.6 84 90.5
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 2.3e-36 155.2 84 90.5
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 2.3e-36 155.2 84 90.5
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 2.3e-36 155.2 84 90.5
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 2.3e-36 155.2 84 90.5
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 2.3e-36 155.2 84 90.5
Actinidia00351 Actinidia chinensis HOM05D002370 ORTHO05D003878 4.0e-36 154.5 84 89.3
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 4.0e-36 154.5 89 84.3
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 4.0e-36 154.5 84 90.5
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 6.8e-36 153.7 84 88.1
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 6.8e-36 153.7 84 89.3
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 6.8e-36 153.7 84 89.3
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 8.9e-36 153.3 84 88.1
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 8.9e-36 153.3 84 88.1
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 8.9e-36 153.3 84 88.1
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 8.9e-36 153.3 84 89.3
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 8.9e-36 153.3 84 89.3
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 8.9e-36 153.3 84 89.3
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 1.2e-35 152.9 84 89.3
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 1.5e-35 152.5 84 88.1
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 1.5e-35 152.5 84 86.9
TAR625G0640 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.5e-35 152.5 84 90.5
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 1.5e-35 152.5 84 89.3
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 2.0e-35 152.1 84 89.3
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 2.0e-35 152.1 84 88.1
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 2.0e-35 152.1 84 88.1
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 2.0e-35 152.1 84 88.1
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 2.0e-35 152.1 84 88.1
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 2.0e-35 152.1 84 88.1
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 2.6e-35 151.8 84 88.1
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 2.6e-35 151.8 84 88.1
arahy.Tifrunner.gnm1.ann1.UC42H8 Arachis hypogaea HOM05D002370 ORTHO05D003878 2.6e-35 151.8 84 88.1
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 2.6e-35 151.8 84 89.3
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 2.6e-35 151.8 84 86.9
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 2.6e-35 151.8 84 88.1
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 3.4e-35 151.4 84 88.1
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 3.4e-35 151.4 84 88.1
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 4.4e-35 151.0 84 86.9
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 4.4e-35 151.0 84 88.1
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 4.4e-35 151.0 84 88.1
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 4.4e-35 151.0 84 86.9
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 5.8e-35 150.6 84 86.9
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 5.8e-35 150.6 84 86.9
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 5.8e-35 150.6 84 86.9
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 5.8e-35 150.6 84 86.9
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 5.8e-35 150.6 84 86.9
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 5.8e-35 150.6 84 86.9
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 5.8e-35 150.6 84 88.1
Cpa.g.sc520.2 Carica papaya HOM05D002370 ORTHO05D003878 7.5e-35 150.2 80 91.2
TPR.G8287 Trifolium pratense HOM05D002370 ORTHO05D003878 9.8e-35 149.8 84 86.9
vmacro01938 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 9.8e-35 149.8 84 86.9
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 1.3e-34 149.4 84 86.9
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 1.7e-34 149.1 84 86.9
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 1.7e-34 149.1 84 86.9
SEGI_17280 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 2.9e-34 148.3 84 86.9
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 3.7e-34 147.9 84 85.7
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.1e-33 146.4 84 85.7
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 1.1e-33 146.4 84 84.5
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.1e-33 146.4 84 85.7
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 1.9e-33 145.6 84 85.7
CDE06G2553 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 3.2e-33 144.8 84 82.1
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 3.2e-33 144.8 85 83.5
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 4.1e-33 144.4 84 83.3
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 4.1e-33 144.4 84 83.3
Eucgr.C04378 Eucalyptus grandis HOM05D002370 ORTHO05D003878 5.4e-33 144.1 84 83.3
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 7.0e-33 143.7 84 82.1
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 9.2e-33 143.3 84 84.5
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 1.2e-32 142.9 84 81.0
CANSAT56G3908 Cannabis sativa HOM05D002370 ORTHO05D003878 1.6e-32 142.5 75 94.7
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 6.0e-32 140.6 84 79.8
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 6.0e-32 140.6 84 81.0
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 7.8e-32 140.2 84 81.0
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 1.5e-30 136.0 84 81.0
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 5.6e-30 134.0 84 78.6
EL10Ac5g12235 Beta vulgaris HOM05D002370 ORTHO05D003878 2.2e-26 122.1 84 72.6
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 1.4e-25 119.4 68 86.8
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 2.7e-24 115.2 89 68.5
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 1.2e-21 106.3 85 63.5
CSS0005224 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D016147 1.8e-20 102.4 59 84.7
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 2.4e-20 102.1 86 65.1
CSS0002620 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D016147 5.2e-20 100.9 59 83.1
CSS0047603 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D016147 5.2e-20 100.9 59 83.1
CSS0014690 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D016147 8.9e-20 100.1 59 83.1
Lsat_1_v5_gn_4_79581 Lactuca sativa HOM05D002370 ORTHO05D016147 1.7e-18 95.9 58 79.3
Lsat_1_v5_gn_3_135700 Lactuca sativa HOM05D002370 ORTHO05D016147 3.2e-17 91.7 55 78.2
MD15G1045400 Malus domestica HOM05D002370 ORTHO05D016147 5.1e-15 84.3 50 86.0
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 2.8e-13 78.6 116 39.7
Lsat_1_v5_gn_9_47020 Lactuca sativa HOM05D000371 ORTHO05D004413 2.8e-13 78.6 49 77.6
SalBow6G7047 Salvia bowleyana HOM05D002370 ORTHO05D003878 3.6e-13 78.2 50 78.0
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 4.7e-13 77.8 115 40.0
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 5.3e-12 74.3 49 73.5
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 4.4e-11 71.2 84 50.0
Nn1g06850 Nelumbo nucifera HOM05D000013 ORTHO05D279905 5.8e-11 70.9 47 78.7
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 9.9e-11 70.1 84 48.8
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 4.2e-09 64.7 86 44.2
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 3.5e-08 61.6 117 35.9


User provided reference genes

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