Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 8.3e-168 593.6 291 100.0
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 3.9e-165 584.7 291 98.3
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 1.2e-129 466.8 291 76.6
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.5e-129 466.5 286 78.3
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 5.8e-129 464.5 291 76.3
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 7.6e-129 464.2 291 75.6
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 9.9e-129 463.8 289 75.8
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 3.8e-128 461.8 291 75.6
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 6.4e-128 461.1 291 75.3
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 1.4e-127 459.9 285 76.8
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.9e-127 459.5 290 76.2
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 4.2e-127 458.4 289 75.8
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 5.5e-127 458.0 291 77.0
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 1.6e-126 456.4 291 74.6
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 4.6e-126 454.9 291 74.6
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 1.3e-125 453.4 291 74.9
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.1e-124 450.3 283 75.3
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 4.3e-124 448.4 289 74.7
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 7.4e-124 447.6 291 75.9
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 7.4e-124 447.6 292 73.3
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 7.4e-124 447.6 292 73.3
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 9.6e-124 447.2 291 73.5
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 9.6e-124 447.2 289 74.4
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 8.2e-123 444.1 291 75.3
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 8.2e-123 444.1 289 74.7
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.1e-122 442.2 291 72.5
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.0e-122 441.8 291 74.6
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.0e-122 441.8 291 74.6
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 4.0e-122 441.8 291 72.9
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 5.3e-122 441.4 301 72.1
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 5.3e-122 441.4 291 74.9
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 6.9e-122 441.0 286 74.5
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 9.0e-122 440.7 287 72.8
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 2.6e-121 439.1 291 73.9
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 3.4e-121 438.7 291 73.2
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 3.4e-121 438.7 292 72.9
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 4.5e-121 438.3 287 73.9
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 7.6e-121 437.6 288 73.3
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.3e-120 436.8 328 67.4
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 1.3e-120 436.8 292 74.7
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.7e-120 436.4 291 72.2
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.9e-120 435.6 291 74.2
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 3.8e-120 435.3 279 74.6
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 4.9e-120 434.9 288 72.6
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 4.9e-120 434.9 293 72.4
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 6.5e-120 434.5 287 72.1
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 6.5e-120 434.5 291 72.9
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.1e-119 433.7 288 72.6
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 1.9e-119 433.0 289 73.0
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 3.2e-119 432.2 292 73.3
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 5.5e-119 431.4 286 73.1
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 5.5e-119 431.4 286 73.1
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 1.2e-118 430.3 287 71.1
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 2.7e-118 429.1 287 72.1
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 3.5e-118 428.7 291 72.2
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 4.6e-118 428.3 286 72.7
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 4.6e-118 428.3 292 72.6
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.0e-117 427.2 289 71.6
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.8e-117 426.4 286 71.7
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 3.0e-117 425.6 291 69.8
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 3.0e-117 425.6 287 71.8
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 3.9e-117 425.2 287 70.4
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 3.9e-117 425.2 287 71.4
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 3.9e-117 425.2 287 71.4
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 5.1e-117 424.9 291 70.4
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 1.5e-116 423.3 324 65.1
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.9e-116 422.9 287 71.4
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.9e-116 422.9 286 71.0
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 2.5e-116 422.5 287 71.4
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.3e-116 422.2 286 71.3
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 4.3e-116 421.8 291 70.1
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 4.3e-116 421.8 284 70.1
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 4.3e-116 421.8 289 72.0
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 5.7e-116 421.4 254 79.1
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.6e-115 419.9 286 71.0
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 3.7e-115 418.7 301 68.8
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 4.8e-115 418.3 285 71.9
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 4.8e-115 418.3 289 69.9
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 8.2e-115 417.5 291 70.1
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 8.2e-115 417.5 288 70.5
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 1.4e-114 416.8 291 71.1
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.4e-114 416.8 291 70.8
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 1.4e-114 416.8 287 70.4
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 3.1e-114 415.6 287 70.7
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 3.1e-114 415.6 287 70.0
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 1.2e-113 413.7 284 70.4
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.2e-113 413.7 254 78.3
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 5.9e-113 411.4 303 68.0
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 4.2e-111 405.2 284 69.7
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 7.9e-110 401.0 286 68.5
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.9e-109 398.7 291 67.4
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.1e-108 397.1 243 78.6
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 1.3e-107 393.7 294 68.7
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 1.4e-106 390.2 293 66.6
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 3.1e-106 389.0 288 68.1
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 4.1e-106 388.7 291 66.7
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 2.6e-105 386.0 255 72.2
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 5.9e-105 384.8 288 67.7
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.0e-104 384.0 326 60.4
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.0e-104 384.0 326 60.4
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 6.5e-104 381.3 284 66.5
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 2.5e-103 379.4 260 70.4
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 7.2e-103 377.9 254 71.3
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.4e-101 373.6 255 71.8
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.7e-99 366.7 232 76.3
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 3.7e-99 365.5 289 63.0
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 8.2e-99 364.4 280 63.6
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 1.8e-98 363.2 281 62.3
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 9.4e-95 350.9 285 61.8
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 8.0e-94 347.8 278 62.6
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 2.2e-91 339.7 258 65.1
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 2.4e-90 336.3 241 68.5
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 9.1e-90 334.3 290 59.7
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 1.7e-88 330.1 284 58.5
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.5e-87 327.0 208 76.9
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 4.8e-83 312.0 283 54.1
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 3.5e-81 305.8 284 56.3
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 8.8e-77 291.2 279 54.1
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 7.5e-76 288.1 228 67.1
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 7.5e-76 288.1 245 57.6
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 2.8e-67 259.6 170 74.1
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 4.0e-61 239.2 192 64.1
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 2.2e-59 233.4 300 46.3
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 1.9e-50 203.8 263 42.6
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 9.2e-50 201.4 130 71.5
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.1e-42 177.9 276 37.3
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.5e-41 172.9 152 63.8
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 7.8e-41 171.8 151 58.9
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 1.6e-38 164.1 152 56.6
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 2.8e-38 163.3 151 57.0
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 3.8e-35 152.9 138 58.7
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 8.7e-32 141.7 113 58.4
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 7.3e-31 138.7 265 32.1
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 2.0e-28 130.6 94 67.0
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 2.9e-27 126.7 368 28.5
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 3.2e-26 123.2 170 44.7
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 7.8e-25 118.6 100 55.0
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 1.7e-24 117.5 82 67.1
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.3e-22 111.3 74 70.3
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 2.4e-21 107.1 87 65.5
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 5.3e-21 105.9 66 72.7
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.3e-16 91.3 60 73.3
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 5.1e-16 89.4 92 50.0
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 5.1e-16 89.4 77 58.4
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 8.7e-16 88.6 69 62.3
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 1.5e-15 87.8 92 51.1
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 2.5e-15 87.0 144 38.9
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 3.3e-15 86.7 88 52.3
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 3.3e-15 86.7 88 52.3
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 1.3e-14 84.7 109 45.0
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 2.8e-14 83.6 187 31.0
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.1e-13 81.6 46 73.9
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.8e-13 80.9 46 73.9
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.8e-13 80.9 46 73.9
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 6.9e-13 79.0 56 67.9
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 9.0e-13 78.6 46 69.6
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 4.5e-12 76.3 122 42.6
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 7.6e-12 75.5 215 30.7
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 4.6e-09 66.2 52 65.4
Actinidia34391 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.3e-08 64.7 48 62.5
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 8.2e-06 55.5 40 65.0


User provided reference genes

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