Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 6.6e-92 340.9 198 100.0
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 1.5e-67 260.0 203 71.4
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 7.4e-59 231.1 159 74.2
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.2e-56 223.8 155 76.1
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.2e-56 223.8 158 71.5
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 3.4e-56 222.2 143 76.9
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 5.9e-56 221.5 152 75.0
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 7.6e-56 221.1 154 74.7
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 7.6e-56 221.1 167 69.5
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 7.6e-56 221.1 142 77.5
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 1.7e-55 219.9 153 73.9
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 3.8e-55 218.8 150 76.0
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 6.5e-55 218.0 160 68.8
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 8.4e-55 217.6 159 72.3
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 1.1e-54 217.2 144 76.4
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 1.9e-54 216.5 141 76.6
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.9e-54 216.5 155 69.7
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 2.5e-54 216.1 157 72.0
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.2e-54 215.7 154 72.7
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 4.2e-54 215.3 154 72.7
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.2e-54 215.3 154 72.7
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.2e-54 215.3 154 72.7
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 5.5e-54 214.9 154 72.7
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 7.2e-54 214.5 153 73.9
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 1.2e-53 213.8 145 74.5
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.6e-53 213.4 161 69.6
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.6e-53 213.4 161 69.6
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 1.6e-53 213.4 139 77.0
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.6e-53 213.4 154 72.7
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 2.1e-53 213.0 152 71.7
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 4.6e-53 211.8 155 71.6
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 4.6e-53 211.8 145 74.5
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 6.1e-53 211.5 138 76.8
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 1.1e-51 207.2 149 73.8
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 4.3e-51 205.3 146 74.0
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 5.7e-51 204.9 153 70.6
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 7.4e-51 204.5 143 75.5
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 9.7e-51 204.1 143 73.4
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 9.7e-51 204.1 147 73.5
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.6e-50 203.4 159 65.4
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 6.3e-50 201.4 160 67.5
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 8.2e-50 201.1 160 65.0
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.4e-49 200.3 162 66.7
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 2.4e-49 199.5 146 69.2
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 3.1e-49 199.1 155 68.4
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 4.1e-49 198.7 224 50.9
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 4.1e-49 198.7 140 71.4
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 5.3e-49 198.4 159 65.4
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 6.9e-49 198.0 157 66.2
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.5e-48 196.8 144 69.4
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 3.4e-48 195.7 144 68.1
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 4.5e-48 195.3 145 67.6
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 4.5e-48 195.3 153 63.4
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.3e-47 193.7 159 64.2
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 1.3e-47 193.7 139 73.4
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.7e-47 193.4 155 64.5
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 1.7e-47 193.4 158 65.2
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 5.0e-47 191.8 122 75.4
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 1.9e-46 189.9 157 59.9
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 7.2e-46 188.0 170 60.6
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 7.2e-46 188.0 146 67.1
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 9.4e-46 187.6 138 67.4
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 2.1e-45 186.4 139 69.1
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 4.6e-45 185.3 144 66.0
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 4.6e-45 185.3 147 64.6
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 6.1e-45 184.9 148 68.2
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 6.1e-45 184.9 153 64.7
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 7.9e-45 184.5 122 76.2
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 1.4e-44 183.7 147 65.3
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 1.4e-44 183.7 141 67.4
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.8e-44 183.3 163 60.1
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 1.8e-44 183.3 146 65.1
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.8e-44 183.3 162 58.6
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 1.8e-44 183.3 151 57.6
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 2.3e-44 183.0 146 64.4
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 2.3e-44 183.0 146 65.1
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 2.3e-44 183.0 146 65.1
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 3.0e-44 182.6 153 61.4
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.0e-44 182.6 145 60.7
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 3.9e-44 182.2 147 64.6
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 3.9e-44 182.2 146 65.1
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 3.9e-44 182.2 147 64.6
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 5.1e-44 181.8 147 64.6
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 5.1e-44 181.8 146 65.1
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.1e-43 180.6 154 61.7
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 1.1e-43 180.6 151 58.3
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 1.5e-43 180.3 139 63.3
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 1.5e-43 180.3 151 57.6
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 2.5e-43 179.5 147 63.9
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 5.7e-43 178.3 140 62.1
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.2e-42 176.4 149 61.1
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 2.8e-42 176.0 144 62.5
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 6.3e-42 174.9 152 60.5
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 8.2e-42 174.5 163 57.1
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.8e-41 173.3 153 60.8
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 1.8e-41 173.3 155 61.9
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 2.4e-41 172.9 163 57.1
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 3.1e-41 172.6 150 62.0
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 4.1e-41 172.2 143 62.9
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 9.1e-41 171.0 154 61.7
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 9.1e-41 171.0 150 58.0
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 1.2e-40 170.6 158 57.6
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 3.4e-40 169.1 138 68.1
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 3.8e-39 165.6 161 56.5
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.5e-38 162.9 140 59.3
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 5.5e-38 161.8 161 55.9
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 7.2e-38 161.4 203 46.8
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 1.2e-37 160.6 140 55.7
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 6.1e-37 158.3 145 60.0
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 2.3e-36 156.4 140 53.6
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 3.0e-36 156.0 133 60.2
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 8.8e-36 154.5 121 63.6
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 2.2e-34 149.8 120 58.3
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 8.2e-34 147.9 115 67.0
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 3.5e-32 142.5 117 62.4
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 3.5e-32 142.5 124 59.7
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 7.7e-32 141.4 153 51.0
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 7.7e-32 141.4 153 51.0
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.5e-30 137.1 153 49.7
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 1.9e-30 136.7 151 52.3
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 3.2e-30 136.0 147 55.1
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.6e-29 132.5 120 51.7
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.3e-28 129.8 138 51.4
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 3.0e-28 129.4 156 46.2
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 4.4e-27 125.6 251 34.7
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 1.6e-24 117.1 128 53.1
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 1.6e-24 117.1 128 53.1
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 5.9e-24 115.2 171 41.5
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 7.7e-24 114.8 133 43.6
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.2e-21 107.5 100 49.0
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.1e-21 106.7 111 57.7
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 3.0e-20 102.8 104 53.8
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 5.2e-20 102.1 169 40.2
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 3.5e-16 89.4 64 70.3
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 1.3e-15 87.4 110 50.0
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 1.9e-14 83.6 102 50.0
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 1.2e-13 80.9 101 49.5
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 3.6e-13 79.3 110 48.2
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 3.6e-13 79.3 101 49.5
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 2.3e-12 76.6 101 47.5
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 2.0e-11 73.6 97 47.4
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 2.0e-11 73.6 97 47.4
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 6.3e-10 68.6 58 62.1
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 5.4e-09 65.5 48 64.6
CDE04G2695 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 2.5e-06 56.6 48 60.4


User provided reference genes

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