Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3389 Cannabis sativa HOM05D003440 ORTHO05D003953 7.5e-62 240.4 122 100.0
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 1.5e-25 119.8 122 52.5
Potri.006G113700 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.1e-23 113.6 124 50.0
Sabra06G0088600 Salix brachista HOM05D003440 ORTHO05D003953 5.3e-23 111.3 123 48.8
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.8e-22 107.8 79 64.6
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 5.8e-22 107.8 79 64.6
Potri.016G143400 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.7e-21 106.3 120 50.0
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 2.9e-21 105.5 114 53.5
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 6.4e-21 104.4 114 50.0
MD12G1195900 Malus domestica HOM05D003440 ORTHO05D003953 6.4e-21 104.4 122 50.0
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 8.4e-21 104.0 105 50.5
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 8.4e-21 104.0 123 48.0
MBI15_g11745_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 1.1e-20 103.6 118 48.3
TWI74G0415 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.1e-20 103.6 123 48.0
Thecc.04G064200 Theobroma cacao HOM05D003440 ORTHO05D003953 3.2e-20 102.1 80 60.0
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 4.2e-20 101.7 82 58.5
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 9.3e-20 100.5 116 47.4
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 1.2e-19 100.1 114 51.8
Cfa016982 Carpinus fangiana HOM05D003440 ORTHO05D003953 2.7e-19 99.0 111 50.5
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 2.7e-19 99.0 137 46.7
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 3.5e-19 98.6 144 41.0
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 1.3e-18 96.7 117 47.0
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 1.7e-18 96.3 118 47.5
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 3.0e-18 95.5 81 54.3
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 3.0e-18 95.5 126 42.9
TAR633G0436 Trochodendron aralioides HOM05D003440 ORTHO05D003953 3.9e-18 95.1 125 44.8
CSS0018403 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 5.1e-18 94.7 91 56.0
Haze_21225 Corylus avellana HOM05D003440 ORTHO05D003953 1.5e-17 93.2 122 43.4
Dinv16919 Davidia involucrata HOM05D003440 ORTHO05D003953 1.5e-17 93.2 119 47.9
RcHm_v2.0_Chr3g0459341 Rosa chinensis HOM05D003440 ORTHO05D003953 1.5e-17 93.2 58 75.9
PSO384G1065 Papaver somniferum HOM05D003440 ORTHO05D003953 3.3e-17 92.0 90 52.2
FAN05G4201 Fragaria x ananassa HOM05D003440 ORTHO05D003953 9.6e-17 90.5 119 48.7
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 9.6e-17 90.5 60 65.0
Carub.0024s0002 Capsella rubella HOM05D003440 ORTHO05D003953 1.6e-16 89.7 56 64.3
FvH4_6g09130 Fragaria vesca HOM05D003440 ORTHO05D003953 3.6e-16 88.6 119 47.9
Sp6g41240 Schrenkiella parvula HOM05D003440 ORTHO05D003953 3.6e-16 88.6 59 62.7
FAN14G4320 Fragaria x ananassa HOM05D003440 ORTHO05D003953 4.8e-16 88.2 119 47.9
PGR004G0491 Punica granatum HOM05D003440 ORTHO05D003953 1.1e-15 87.0 59 62.7
COL.COLO4_20128 Corchorus olitorius HOM05D003440 ORTHO05D003953 1.8e-15 86.3 122 43.4
FAN02G2454 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.8e-15 86.3 123 43.1
Thhalv10015102m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 3.1e-15 85.5 59 69.5
FAN09G2448 Fragaria x ananassa HOM05D000046 ORTHO05D000457 3.1e-15 85.5 119 47.1
AT5G01015 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 4.0e-15 85.1 55 60.0
Aa31LG5G11290 Aethionema arabicum HOM05D000046 ORTHO05D000457 5.3e-15 84.7 55 60.0
AL6G10020 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 5.3e-15 84.7 54 61.1
HanXRQChr11g0329301 Helianthus annuus HOM05D003440 ORTHO05D003953 2.0e-14 82.8 119 40.3
HanXRQChr11g0329311 Helianthus annuus HOM05D003440 ORTHO05D003953 9.9e-14 80.5 60 58.3
Lsat_1_v5_gn_8_108200 Lactuca sativa HOM05D003440 ORTHO05D003953 1.7e-13 79.7 89 46.1
CARHR212370 Cardamine hirsuta HOM05D003440 ORTHO05D003953 2.2e-13 79.3 55 65.5
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 2.9e-13 79.0 83 43.4
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 1.9e-12 76.3 80 41.2
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 2.4e-12 75.9 98 37.8
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 5.4e-12 74.7 94 45.7
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 5.4e-12 74.7 60 55.0
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 7.1e-12 74.3 115 33.0
Sed0001280 Sechium edule HOM05D003440 ORTHO05D003953 7.1e-12 74.3 64 50.0
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 9.3e-12 73.9 63 49.2
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 9.3e-12 73.9 94 45.7
PGSC0003DMG400011798 Solanum tuberosum HOM05D003440 ORTHO05D003953 1.2e-11 73.6 69 49.3
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 1.6e-11 73.2 56 51.8
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 1.6e-11 73.2 56 51.8
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 1.6e-11 73.2 56 51.8
CSS0029757 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 1.6e-11 73.2 68 44.1
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 1.6e-11 73.2 80 41.2
PGR031G2316 Punica granatum HOM05D003440 ORTHO05D003953 1.6e-11 73.2 86 39.5
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 1.6e-11 73.2 84 41.7
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 2.7e-11 72.4 115 34.8
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 2.7e-11 72.4 56 51.8
Lj1g0010972 Lotus japonicus HOM05D003440 ORTHO05D003953 2.7e-11 72.4 80 41.2
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 2.7e-11 72.4 56 51.8
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 3.5e-11 72.0 56 51.8
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 3.5e-11 72.0 56 51.8
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 3.5e-11 72.0 56 51.8
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 3.5e-11 72.0 67 43.3
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 3.5e-11 72.0 56 51.8
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 3.5e-11 72.0 60 48.3
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 3.5e-11 72.0 62 46.8
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 3.5e-11 72.0 62 46.8
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 3.5e-11 72.0 56 51.8
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 3.5e-11 72.0 56 51.8
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 3.5e-11 72.0 62 46.8
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 3.5e-11 72.0 62 46.8
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 3.5e-11 72.0 62 46.8
TPR.G30343 Trifolium pratense HOM05D003440 ORTHO05D003953 3.5e-11 72.0 80 42.5
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 3.5e-11 72.0 56 51.8
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 4.6e-11 71.6 121 34.7
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 4.6e-11 71.6 115 34.8
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 4.6e-11 71.6 115 34.8
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 4.6e-11 71.6 115 34.8
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 4.6e-11 71.6 80 40.0
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 4.6e-11 71.6 80 40.0
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 4.6e-11 71.6 110 34.5
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 4.6e-11 71.6 69 42.0
SalBow1G3495 Salvia bowleyana HOM05D003440 ORTHO05D003953 4.6e-11 71.6 63 42.9
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 6.0e-11 71.2 115 34.8
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 6.0e-11 71.2 111 34.2
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 7.9e-11 70.9 116 35.3
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 7.9e-11 70.9 56 50.0
MD04G1244000 Malus domestica HOM05D003440 ORTHO05D003953 7.9e-11 70.9 56 50.0
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 7.9e-11 70.9 60 46.7
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 7.9e-11 70.9 56 50.0
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 1.0e-10 70.5 56 51.8
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 1.0e-10 70.5 56 51.8
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 1.0e-10 70.5 110 37.3
Glyma.09G251300 Glycine max HOM05D003440 ORTHO05D003953 1.0e-10 70.5 80 40.0
Glyma.18G241200 Glycine max HOM05D003440 ORTHO05D003953 1.0e-10 70.5 80 40.0
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 1.0e-10 70.5 56 50.0
Psat3g103680 Pisum sativum HOM05D003440 ORTHO05D003953 1.0e-10 70.5 56 50.0
Cpa.g.sc39.4 Carica papaya HOM05D003440 ORTHO05D003953 1.3e-10 70.1 121 35.5
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 1.3e-10 70.1 56 50.0
MELO3C008739.2 Cucumis melo HOM05D003440 ORTHO05D003953 1.3e-10 70.1 56 50.0
CsaV3_2G009650 Cucumis sativus L. HOM05D003440 ORTHO05D003953 1.3e-10 70.1 56 50.0
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 1.3e-10 70.1 56 48.2
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.3e-10 70.1 56 48.2
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.3e-10 70.1 56 48.2
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.3e-10 70.1 56 48.2
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 1.3e-10 70.1 56 48.2
SalBow6G6125 Salvia bowleyana HOM05D003440 ORTHO05D003953 1.3e-10 70.1 120 35.0
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 1.8e-10 69.7 81 39.5
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 1.8e-10 69.7 56 50.0
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 1.8e-10 69.7 56 50.0
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 1.8e-10 69.7 56 48.2
MBI11_g07420_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 1.8e-10 69.7 56 50.0
Os12g0121000 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.8e-10 69.7 84 41.7
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 1.8e-10 69.7 56 48.2
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 1.8e-10 69.7 57 49.1
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.8e-10 69.7 56 48.2
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 2.3e-10 69.3 115 35.7
Phvul.008G054900 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 2.3e-10 69.3 56 48.2
Sed0009834 Sechium edule HOM05D003440 ORTHO05D003953 2.3e-10 69.3 56 50.0
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 3.0e-10 68.9 112 34.8
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 3.0e-10 68.9 113 35.4
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 3.0e-10 68.9 112 33.0
MD12G1259800 Malus domestica HOM05D003440 ORTHO05D003953 3.0e-10 68.9 116 36.2
Oeu040492.1 Olea europaea HOM05D003440 ORTHO05D003953 3.0e-10 68.9 81 37.0
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 3.9e-10 68.6 56 46.4
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 3.9e-10 68.6 56 46.4
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 3.9e-10 68.6 115 33.0
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 3.9e-10 68.6 119 35.3
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 3.9e-10 68.6 126 34.1
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 3.9e-10 68.6 96 35.4
vmacro10410 Vaccinium macrocarpon HOM05D003440 ORTHO05D003953 3.9e-10 68.6 88 42.0
Potri.019G053100 Populus trichocarpa HOM05D003440 ORTHO05D003953 5.1e-10 68.2 113 35.4
ATR0561G171 Amborella trichopoda HOM05D003440 ORTHO05D003953 6.7e-10 67.8 114 32.5
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 6.7e-10 67.8 56 46.4
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 6.7e-10 67.8 56 46.4
Hund21895 Selenicereus undatus HOM05D003440 ORTHO05D003953 6.7e-10 67.8 54 46.3
Solyc09g005200.3 Solanum lycopersicum HOM05D003440 ORTHO05D003953 6.7e-10 67.8 38 68.4
Sopen09g001180 Solanum pennellii HOM05D003440 ORTHO05D003953 6.7e-10 67.8 38 68.4
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 8.7e-10 67.4 113 33.6
Gohir.A05G391000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 8.7e-10 67.4 56 46.4
Gohir.D04G026200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 8.7e-10 67.4 56 46.4
Gorai.012G028800 Gossypium raimondii HOM05D003440 ORTHO05D003953 8.7e-10 67.4 56 46.4
Rhsim09G0129600 Rhododendron simsii HOM05D003440 ORTHO05D003953 8.7e-10 67.4 113 35.4
Sabra19G0062600 Salix brachista HOM05D003440 ORTHO05D003953 8.7e-10 67.4 113 35.4
Ciclev10013140m.g Citrus clementina HOM05D003440 ORTHO05D003953 1.1e-09 67.0 122 32.8
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 1.1e-09 67.0 120 32.5
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 1.5e-09 66.6 56 46.4
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 1.5e-09 66.6 111 33.3
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 1.5e-09 66.6 56 44.6
Peaxi162Scf00253g00722 Petunia axillaris HOM05D003440 ORTHO05D003953 1.9e-09 66.2 56 44.6
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 1.9e-09 66.2 56 46.4
Manes.08G166301 Manihot esculenta HOM05D003440 ORTHO05D003953 3.3e-09 65.5 101 43.6
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 5.6e-09 64.7 65 41.5
Os11g0121300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 7.4e-09 64.3 66 42.4
HanXRQChr16g0512031 Helianthus annuus HOM05D003440 ORTHO05D003953 9.6e-09 63.9 119 29.4
Aqoxy7G03194 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 1.3e-08 63.5 116 37.1
CiPaw.07G079500 Carya illinoinensis HOM05D003440 ORTHO05D003953 1.6e-08 63.2 75 38.7
ATR1127G125 Amborella trichopoda HOM05D003440 ORTHO05D003953 3.7e-08 62.0 58 44.8
SGA_v2.0_scaffold122G33174 Striga asiatica HOM05D003440 ORTHO05D003953 3.7e-08 62.0 69 37.7
Aqoxy7G03195 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 4.8e-08 61.6 116 37.1
Haze_04543 Corylus avellana HOM05D003440 ORTHO05D003953 6.2e-08 61.2 50 50.0
FAN09G4309 Fragaria x ananassa HOM05D003440 ORTHO05D003953 6.2e-08 61.2 50 50.0
FAN14G3476 Fragaria x ananassa HOM05D003440 ORTHO05D003953 6.2e-08 61.2 50 50.0
MELO3C010069.2 Cucumis melo HOM05D003440 ORTHO05D003953 1.8e-07 59.7 50 50.0
HanXRQChr05g0150821 Helianthus annuus HOM05D003440 ORTHO05D003953 1.8e-07 59.7 58 43.1
Os01g0917300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.8e-07 59.7 71 38.0
CDE04G0842 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 2.4e-07 59.3 84 39.3
CDE12G0097 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 2.4e-07 59.3 119 35.3
FAN05G5443 Fragaria x ananassa HOM05D003440 ORTHO05D003953 6.9e-07 57.8 106 31.1
Hund07337 Selenicereus undatus HOM05D003440 ORTHO05D003953 1.2e-06 57.0 55 45.5
HanXRQChr14g0434751 Helianthus annuus HOM05D003440 ORTHO05D003953 1.5e-06 56.6 59 42.4
AUR62000320 Chenopodium quinoa HOM05D003440 ORTHO05D003953 4.5e-06 55.1 59 40.7
AUR62006666 Chenopodium quinoa HOM05D003440 ORTHO05D003953 1.0e-05 53.9 48 45.8


User provided reference genes

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