Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 9.9e-121 436.8 222 100.0
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 3.2e-71 272.3 224 66.1
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 5.5e-71 271.6 224 67.0
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 1.0e-69 267.3 224 66.5
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 2.6e-68 262.7 224 63.4
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 1.7e-67 260.0 223 63.2
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 6.3e-67 258.1 222 64.0
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 1.8e-66 256.5 224 62.5
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.7e-65 252.7 227 61.7
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 3.5e-65 252.3 224 63.4
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 5.9e-65 251.5 227 61.2
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.7e-64 250.0 224 62.5
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 8.5e-64 247.7 253 57.7
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.1e-63 247.3 227 60.4
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 9.5e-63 244.2 227 63.0
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 1.6e-62 243.4 242 59.1
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.6e-62 242.3 219 60.7
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 6.1e-62 241.5 222 60.4
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.4e-61 240.4 224 61.6
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 1.8e-61 240.0 226 59.7
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 2.3e-61 239.6 221 62.4
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 4.0e-61 238.8 224 62.1
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.0e-61 238.8 224 61.2
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 8.8e-61 237.7 224 59.4
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.2e-60 237.3 224 58.0
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.5e-60 236.9 229 57.6
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 2.6e-60 236.1 224 58.5
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 4.4e-60 235.3 274 50.7
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 4.4e-60 235.3 229 60.3
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.3e-59 233.8 229 56.8
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 2.2e-59 233.0 224 60.7
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 6.3e-59 231.5 224 57.1
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 1.1e-58 230.7 225 58.2
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 1.4e-58 230.3 224 59.4
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 3.1e-58 229.2 224 59.4
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.1e-58 229.2 228 59.6
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 4.1e-58 228.8 223 59.2
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 1.2e-57 227.3 209 59.3
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.6e-57 226.9 222 59.5
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 2.0e-57 226.5 220 57.3
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 5.9e-57 224.9 228 57.9
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 7.7e-57 224.6 228 58.8
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 1.0e-56 224.2 223 57.0
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.0e-56 224.2 230 55.7
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.3e-56 223.8 228 57.0
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 2.3e-56 223.0 223 59.2
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.3e-56 223.0 206 60.7
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 2.3e-56 223.0 180 68.9
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 2.3e-56 223.0 224 56.7
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.3e-56 223.0 227 55.9
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 5.0e-56 221.9 223 55.2
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 1.5e-55 220.3 224 56.2
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 2.5e-55 219.5 223 55.6
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 3.3e-55 219.2 224 55.8
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 4.3e-55 218.8 224 57.6
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 7.3e-55 218.0 168 69.6
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 9.5e-55 217.6 156 71.8
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 9.5e-55 217.6 226 55.3
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 9.5e-55 217.6 224 56.7
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.6e-54 216.9 241 55.2
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.6e-54 216.9 223 56.5
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 6.1e-54 214.9 233 55.8
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.0e-53 214.2 225 57.8
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 1.0e-53 214.2 225 56.4
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 1.4e-53 213.8 153 71.9
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.8e-53 213.4 225 57.8
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 2.3e-53 213.0 226 54.0
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 4.0e-53 212.2 225 58.7
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 4.0e-53 212.2 171 65.5
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 8.9e-53 211.1 171 65.5
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 1.5e-52 210.3 222 53.2
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 1.5e-52 210.3 155 71.0
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 2.6e-52 209.5 224 54.0
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 4.4e-52 208.8 165 67.9
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 4.4e-52 208.8 155 70.3
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 7.5e-52 208.0 168 63.1
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 9.8e-52 207.6 220 55.5
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 1.3e-51 207.2 222 53.2
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 1.3e-51 207.2 222 52.7
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 6.4e-51 204.9 160 67.5
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 8.3e-51 204.5 181 61.3
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.1e-50 204.1 213 54.9
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 1.8e-50 203.4 164 63.4
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 7.0e-50 201.4 190 58.9
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 2.7e-49 199.5 180 61.7
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 5.9e-49 198.4 225 51.6
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 7.8e-49 198.0 224 51.3
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.0e-48 197.6 216 55.1
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 1.3e-48 197.2 223 53.4
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 3.0e-48 196.1 224 50.4
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 5.0e-48 195.3 225 52.9
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 6.6e-48 194.9 165 61.8
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 8.6e-48 194.5 153 69.3
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 1.1e-47 194.1 225 52.4
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 1.1e-47 194.1 155 63.9
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 3.3e-47 192.6 153 65.4
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 5.6e-47 191.8 157 64.3
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 2.1e-46 189.9 159 62.3
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 2.8e-46 189.5 160 63.8
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 2.8e-46 189.5 160 63.8
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 3.6e-46 189.1 231 51.5
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 4.7e-46 188.7 160 63.1
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 4.7e-46 188.7 198 54.5
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 8.0e-46 188.0 159 61.6
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 8.0e-46 188.0 159 61.6
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 4.0e-45 185.7 144 66.7
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 2.2e-43 179.9 144 67.4
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 5.4e-42 175.3 229 46.7
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 2.0e-41 173.3 214 47.7
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 3.0e-40 169.5 148 63.5
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 8.6e-40 167.9 159 56.0
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 8.6e-40 167.9 167 52.1
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 3.3e-39 166.0 181 54.1
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 3.1e-37 159.5 113 77.0
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 1.2e-36 157.5 173 53.8
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 2.6e-36 156.4 135 65.2
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 4.4e-36 155.6 130 66.9
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 5.8e-36 155.2 191 54.5
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 4.9e-35 152.1 172 51.7
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 5.1e-32 142.1 152 52.0
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 7.3e-31 138.3 146 54.8
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 4.0e-29 132.5 163 47.2
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 1.2e-28 131.0 169 47.3
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 2.4e-26 123.2 111 64.0
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 3.2e-26 122.9 149 46.3
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 6.0e-25 118.6 169 44.4
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.0e-24 117.9 87 66.7
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 1.9e-23 113.6 94 67.0
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 1.4e-21 107.5 165 41.8
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 1.8e-21 107.1 87 67.8
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 8.9e-21 104.8 141 44.7
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 2.6e-20 103.2 79 73.4
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 5.8e-20 102.1 150 48.0
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 2.2e-19 100.1 148 41.9
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 2.2e-19 100.1 107 51.4
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 2.9e-19 99.8 147 47.6
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.9e-18 97.1 173 42.8
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 7.8e-17 91.7 104 50.0
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 6.6e-16 88.6 199 37.7
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 2.5e-15 86.7 110 44.5
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 1.3e-14 84.3 101 47.5
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 1.1e-13 81.3 117 48.7
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 5.3e-13 79.0 88 47.7
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.6e-12 76.6 52 71.2
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-11 74.3 71 54.9
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 1.7e-11 73.9 131 37.4
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.4e-10 70.9 137 35.0
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 1.1e-07 61.2 89 47.2
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 7.4e-07 58.5 42 64.3
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 4.8e-06 55.8 151 31.8


User provided reference genes

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