Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3369 Cannabis sativa HOM05D002567 ORTHO05D007435 9.6e-278 959.5 484 100.0
CiPaw.07G103700 Carya illinoinensis HOM05D002567 ORTHO05D007435 1.1e-183 647.1 505 67.9
TAR365G0282 Trochodendron aralioides HOM05D002567 ORTHO05D007435 1.1e-183 647.1 491 69.5
TWI14G0999 Tripterygium wilfordii HOM05D002567 ORTHO05D007435 8.9e-183 644.0 489 67.7
Prupe.8G255700 Prunus persica HOM05D002567 ORTHO05D007435 1.3e-181 640.2 516 67.4
FvH4_c6g00080 Fragaria vesca HOM05D002567 ORTHO05D007435 3.8e-181 638.6 488 69.1
MD03G1284200 Malus domestica HOM05D002567 ORTHO05D007435 3.8e-181 638.6 494 70.0
QL12p030562 Quercus lobata HOM05D002567 ORTHO05D007435 1.1e-180 637.1 470 70.2
FAN20G2691 Fragaria x ananassa HOM05D002567 ORTHO05D007435 3.2e-180 635.6 506 67.2
Thecc.01G294000 Theobroma cacao HOM05D002567 ORTHO05D007435 9.2e-180 634.0 498 68.1
Glyma.02G153800 Glycine max HOM05D002567 ORTHO05D007435 2.1e-179 632.9 490 67.8
Glyma.10G020300 Glycine max HOM05D002567 ORTHO05D007435 2.7e-179 632.5 493 68.2
FAN24G0883 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.0e-178 630.6 506 66.6
Ca_10357_v3 Cicer arietinum L. HOM05D002567 ORTHO05D007435 1.7e-178 629.8 495 67.5
Phvul.007G165166 Phaseolus vulgaris HOM05D002567 ORTHO05D007435 3.0e-178 629.0 491 68.0
TPR.G33972 Trifolium pratense HOM05D002567 ORTHO05D007435 3.9e-178 628.6 492 67.5
Gohir.D08G083800 Gossypium hirsutum HOM05D002567 ORTHO05D007435 3.3e-177 625.5 499 66.7
Sed0025005 Sechium edule HOM05D002567 ORTHO05D007435 4.3e-177 625.2 499 68.1
RcHm_v2.0_Chr6g0293181 Rosa chinensis HOM05D002567 ORTHO05D007435 2.1e-176 622.9 495 66.7
Medtr1g088870 Medicago truncatula HOM05D002567 ORTHO05D007435 6.9e-175 617.8 498 66.5
Gorai.004G088200 Gossypium raimondii HOM05D002567 ORTHO05D007435 1.5e-174 616.7 524 63.4
VMungo0720G1827 Vigna mungo HOM05D002567 ORTHO05D007435 3.4e-174 615.5 491 66.4
Gohir.A08G074500 Gossypium hirsutum HOM05D002567 ORTHO05D007435 5.8e-174 614.8 500 65.0
Eucgr.K03452 Eucalyptus grandis HOM05D002567 ORTHO05D007435 9.9e-174 614.0 500 65.0
Cfa005987 Carpinus fangiana HOM05D002567 ORTHO05D007435 2.2e-173 612.8 447 72.9
ClCG09G006190 Citrullus lanatus HOM05D002567 ORTHO05D007435 8.4e-173 610.9 502 66.1
FAN15G3695 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.4e-172 610.1 542 61.4
FvH4_c6g00110 Fragaria vesca HOM05D002567 ORTHO05D007435 2.4e-172 609.4 462 69.7
GSVIVG01010968001 Vitis vinifera HOM05D002567 ORTHO05D007435 1.2e-171 607.1 505 63.8
Cpa.g.sc9.190 Carica papaya HOM05D002567 ORTHO05D007435 1.6e-171 606.7 496 65.1
Manes.05G065800 Manihot esculenta HOM05D002567 ORTHO05D007435 2.1e-171 606.3 498 64.9
Lj5g0023248 Lotus japonicus HOM05D002567 ORTHO05D007435 1.0e-170 604.0 499 64.1
Ciclev10019856m.g Citrus clementina HOM05D002567 ORTHO05D007435 3.9e-170 602.1 497 66.4
Rhsim01G0282400 Rhododendron simsii HOM05D002567 ORTHO05D007435 6.6e-170 601.3 501 64.5
CSS0018114 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 1.1e-169 600.5 493 66.1
CSS0004593 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 1.9e-169 599.7 493 66.1
Actinidia24843 Actinidia chinensis HOM05D002567 ORTHO05D007435 2.5e-169 599.4 516 63.0
Nn5g30061 Nelumbo nucifera HOM05D002567 ORTHO05D007435 3.3e-169 599.0 495 64.6
Lalb_Chr06g0163361 Lupinus albus HOM05D002567 ORTHO05D007435 4.3e-169 598.6 495 64.6
SalBow3G3633 Salvia bowleyana HOM05D002567 ORTHO05D007435 5.6e-169 598.2 501 64.1
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 2.8e-168 595.9 448 69.6
Migut.D00184 Erythranthe guttata HOM05D002567 ORTHO05D007435 2.4e-167 592.8 494 63.4
Oeu046707.1 Olea europaea HOM05D002567 ORTHO05D007435 7.6e-166 587.8 497 64.6
PGR044G2614 Punica granatum HOM05D002567 ORTHO05D007435 4.9e-165 585.1 505 62.8
vmacro14988 Vaccinium macrocarpon HOM05D002567 ORTHO05D007435 7.1e-164 581.3 497 63.2
Cc01_g20520 Coffea canephora HOM05D002567 ORTHO05D007435 7.9e-163 577.8 450 65.8
Aqoxy5G00699 Aquilegia oxysepala HOM05D002567 ORTHO05D007435 1.0e-162 577.4 497 62.8
THA.LOC104817512 Tarenaya hassleriana HOM05D002567 ORTHO05D007435 3.9e-162 575.5 509 61.3
Lj2C1189T5 Lonicera japonica HOM05D002567 ORTHO05D007435 5.1e-162 575.1 507 63.1
PSO832G0331 Papaver somniferum HOM05D002567 ORTHO05D007435 1.1e-161 573.9 485 64.1
SGA_v2.0_scaffold1G00388 Striga asiatica HOM05D002567 ORTHO05D007435 1.6e-160 570.1 495 62.6
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 9.0e-159 564.3 451 68.3
CARHR143220 Cardamine hirsuta HOM05D002567 ORTHO05D007435 2.0e-158 563.1 483 62.1
Aa31LG1G29180 Aethionema arabicum HOM05D002567 ORTHO05D007435 9.9e-158 560.8 500 61.0
Duzib133G1128 Durio zibethinus HOM05D002567 ORTHO05D007435 1.7e-157 560.1 495 62.8
Sp4g29760 Schrenkiella parvula HOM05D002567 ORTHO05D007435 6.4e-157 558.1 484 62.6
PGSC0003DMG402011364 Solanum tuberosum HOM05D002567 ORTHO05D007435 7.1e-156 554.7 445 64.3
Thhalv10001431m.g Eutrema salsugineum HOM05D002567 ORTHO05D007435 1.2e-155 553.9 472 62.7
A03p26080 Brassica napus HOM05D002567 ORTHO05D007435 1.6e-155 553.5 477 61.6
BcaB01g03155 Brassica carinata HOM05D002567 ORTHO05D007435 3.5e-155 552.4 449 64.4
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 6.0e-155 551.6 486 60.5
BraA03t11823Z Brassica rapa HOM05D002567 ORTHO05D007435 1.0e-154 550.8 477 61.6
Sopen09g029600 Solanum pennellii HOM05D002567 ORTHO05D007435 1.3e-154 550.4 445 64.0
AL4G47410 Arabidopsis lyrata HOM05D002567 ORTHO05D007435 1.8e-154 550.1 483 60.9
Hund05401 Selenicereus undatus HOM05D002567 ORTHO05D007435 1.8e-154 550.1 452 65.3
Sc05g0004310 Simmondsia chinensis HOM05D002567 ORTHO05D007435 1.8e-154 550.1 503 60.0
BolC3t15458H Brassica oleracea HOM05D002567 ORTHO05D007435 8.7e-154 547.7 477 60.8
AT2G47830 Arabidopsis thaliana HOM05D002567 ORTHO05D007435 4.3e-153 545.4 478 60.5
Os03g0346800 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D007435 4.3e-153 545.4 498 61.2
BcaC01g05016 Brassica carinata HOM05D002567 ORTHO05D007435 2.1e-152 543.1 477 60.4
C03p31100 Brassica napus HOM05D002567 ORTHO05D007435 3.7e-152 542.3 476 60.3
ATR0706G146 Amborella trichopoda HOM05D002567 ORTHO05D007435 2.4e-151 539.7 432 64.1
DCAR_012404 Daucus carota HOM05D002567 ORTHO05D007435 3.8e-149 532.3 464 62.7
HanXRQChr01g0001661 Helianthus annuus HOM05D002567 ORTHO05D007435 2.8e-144 516.2 465 59.8
CAN.G1562.6 Capsicum annuum HOM05D002567 ORTHO05D007435 8.2e-144 514.6 440 61.6
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 6.9e-143 511.5 443 60.9
ECA248G3501 Erigeron canadensis HOM05D002567 ORTHO05D007435 2.0e-142 510.0 396 64.4
Lsat_1_v5_gn_5_189341 Lactuca sativa HOM05D002567 ORTHO05D007435 1.2e-139 500.7 421 61.3
AUR62043263 Chenopodium quinoa HOM05D002567 ORTHO05D007435 1.7e-136 490.3 499 56.1
Dinv19731 Davidia involucrata HOM05D002567 ORTHO05D007435 2.4e-135 486.5 345 73.3
Psat6g167000 Pisum sativum HOM05D002567 ORTHO05D007435 1.5e-134 483.8 346 70.8
AUR62033190 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.6e-129 466.5 422 60.0
Hma1.2p1_0399F.1_g143930 Hydrangea macrophylla HOM05D002567 ORTHO05D007435 9.7e-129 464.5 376 65.4
MELO3C016044.2 Cucumis melo HOM05D002567 ORTHO05D007435 3.4e-126 456.1 493 56.4
Ah.15g093860 Amaranthus hybridus HOM05D002567 ORTHO05D007435 1.9e-124 450.3 490 53.1
CsaV3_7G028940 Cucumis sativus L. HOM05D002567 ORTHO05D007435 1.7e-117 427.2 325 68.6
HPP92_011840 Vanilla planifolia HOM05D002567 ORTHO05D007435 7.0e-111 405.2 299 66.6
Mapoly0007s0103 Marchantia polymorpha HOM05D002567 ORTHO05D007435 2.9e-109 399.8 344 59.0
Carub.0004s3055 Capsella rubella HOM05D002567 ORTHO05D007435 2.1e-107 393.7 339 61.1
Sed0015917 Sechium edule HOM05D002567 ORTHO05D007435 1.0e-106 391.3 334 64.4
Potri.002G209023 Populus trichocarpa HOM05D002567 ORTHO05D007435 6.3e-104 382.1 292 68.8
Pp3c14_1830 Physcomitrium patens HOM05D002567 ORTHO05D007435 4.5e-102 375.9 511 43.4
Pp3c10_1060 Physcomitrium patens HOM05D002567 ORTHO05D007435 1.3e-101 374.4 496 44.2
SMO145G0291 Selaginella moellendorffii HOM05D002567 ORTHO05D007435 4.7e-99 365.9 329 58.1
Zm00001eb016640 Zea mays HOM05D002567 ORTHO05D007435 2.3e-90 337.0 279 62.0
CDE02G2579 Ceratophyllum demersum HOM05D002567 ORTHO05D007435 2.6e-89 333.6 319 57.4
FAN19G1365 Fragaria x ananassa HOM05D002567 ORTHO05D007435 4.6e-86 322.8 249 66.3
Atru.chr5.1231 Acer truncatum HOM05D002567 ORTHO05D007435 8.0e-83 312.0 265 65.3
AUR62033191 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.6e-81 307.0 245 66.1
Peaxi162Scf00067g01814 Petunia axillaris HOM05D002567 ORTHO05D007435 1.7e-77 294.3 282 57.8
Solyc09g074740.2 Solanum lycopersicum HOM05D002567 ORTHO05D007435 6.8e-74 282.3 220 65.5
Peaxi162Scf00067g01819 Petunia axillaris HOM05D002567 ORTHO05D007435 9.9e-73 278.5 230 63.9
Solyc09g074750.3 Solanum lycopersicum HOM05D002567 ORTHO05D007435 3.2e-71 273.5 232 61.6
Atru.chr5.1230 Acer truncatum HOM05D002567 ORTHO05D007435 1.4e-66 258.1 213 65.3
arahy.Tifrunner.gnm1.ann1.XK0FMC Arachis hypogaea HOM05D002567 ORTHO05D007435 1.3e-37 161.8 346 37.3
arahy.Tifrunner.gnm1.ann1.5I5ID6 Arachis hypogaea HOM05D002567 ORTHO05D007435 6.2e-35 152.9 149 57.0
arahy.Tifrunner.gnm1.ann1.L0WASJ Arachis hypogaea HOM05D002567 ORTHO05D007435 1.1e-34 152.1 149 57.0
CAN.G1349.13 Capsicum annuum HOM05D000586 ORTHO05D007435 6.3e-27 126.3 97 63.9
PRCOL_00000973 Prasinoderma coloniale HOM05D002567 ORTHO05D007435 6.9e-26 122.9 306 29.7
MCO08G095 Micromonas commoda HOM05D002567 ORTHO05D007435 2.6e-25 120.9 325 29.8
DCAR_017872 Daucus carota HOM05D002567 ORTHO05D007435 4.5e-25 120.2 75 74.7
Cfa024758 Carpinus fangiana HOM05D002567 ORTHO05D007435 1.3e-24 118.6 322 28.9
Duzib133G1109 Durio zibethinus HOM05D002567 ORTHO05D007435 1.4e-21 108.6 95 56.8
Duzib133G0811 Durio zibethinus HOM05D002567 ORTHO05D007435 2.5e-20 104.4 95 55.8
CAN.G312.11 Capsicum annuum HOM05D000586 ORTHO05D003356 3.7e-19 100.5 81 64.2
Ciclev10006598m.g Citrus clementina HOM05D002567 ORTHO05D007435 3.7e-19 100.5 64 79.7
CARHR055860 Cardamine hirsuta HOM05D002567 ORTHO05D007435 6.3e-19 99.8 92 57.6
Nitab4.5_0011064g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 3.1e-18 97.4 108 51.9
Actinidia21062 Actinidia chinensis HOM05D002567 ORTHO05D007435 1.3e-16 92.0 69 69.6
CARHR220570 Cardamine hirsuta HOM05D002567 ORTHO05D007435 2.2e-16 91.3 95 55.8
CAN.G2.56 Capsicum annuum HOM05D000586 ORTHO05D003356 3.6e-14 84.0 54 74.1
Oeu011429.1 Olea europaea HOM05D002567 ORTHO05D007435 3.9e-13 80.5 48 79.2
Nitab4.5_0005578g0030 Nicotiana tabacum HOM05D002567 ORTHO05D007435 7.4e-12 76.3 84 50.0
Ca_16274_v3 Cicer arietinum L. HOM05D000870 ORTHO05D000715 7.0e-10 69.7 299 22.4
arahy.Tifrunner.gnm1.ann1.66ANXA Arachis hypogaea HOM05D002567 ORTHO05D007435 5.9e-09 66.6 61 50.8
SEGI_29117 Sequoiadendron giganteum HOM05D002567 ORTHO05D007435 5.9e-09 66.6 70 44.3
AUR62042552 Chenopodium quinoa HOM05D004615 ORTHO05D000004 7.7e-09 66.2 116 37.9
Psat5g111840 Pisum sativum HOM05D000870 ORTHO05D000715 7.7e-09 66.2 313 21.7
SalBow8G1376 Salvia bowleyana HOM05D000870 ORTHO05D000715 1.0e-08 65.9 304 24.7
SalBow8G4043 Salvia bowleyana HOM05D000870 ORTHO05D000715 1.0e-08 65.9 304 24.7
SalBow8G5136 Salvia bowleyana HOM05D000870 ORTHO05D000715 1.0e-08 65.9 304 24.7
arahy.Tifrunner.gnm1.ann1.1E45SP Arachis hypogaea HOM05D000870 ORTHO05D000715 1.7e-08 65.1 155 28.4
arahy.Tifrunner.gnm1.ann1.3T6XNU Arachis hypogaea HOM05D000870 ORTHO05D000715 1.7e-08 65.1 155 28.4
Glyma.09G122600 Glycine max HOM05D000870 ORTHO05D000715 2.2e-08 64.7 303 21.8
PSO675G5941 Papaver somniferum HOM05D000870 ORTHO05D000715 5.0e-08 63.5 300 21.3
Aa31LG4G1490 Aethionema arabicum HOM05D000870 ORTHO05D000715 6.5e-08 63.2 301 21.9
ClCG02G018690 Citrullus lanatus HOM05D000870 ORTHO05D000715 6.5e-08 63.2 300 21.3
AUR62040423 Chenopodium quinoa HOM05D000107 ORTHO05D000062 8.5e-08 62.8 37 73.0
Sopen09g029580 Solanum pennellii HOM05D002567 ORTHO05D007435 8.5e-08 62.8 47 66.0
Actinidia12764 Actinidia chinensis HOM05D000870 ORTHO05D000715 1.1e-07 62.4 301 23.3
Cre03.g160750 Chlamydomonas reinhardtii HOM05D000870 ORTHO05D000715 1.9e-07 61.6 301 21.6
CANSAT56G0490 Cannabis sativa HOM05D000870 ORTHO05D000715 4.2e-07 60.5 300 22.0
Rhsim06G0243200 Rhododendron simsii HOM05D000870 ORTHO05D000715 5.5e-07 60.1 301 21.9
CSS0026766 Camellia sinensis var. sinensis HOM05D000870 ORTHO05D000715 7.2e-07 59.7 304 24.0
DCAR_009656 Daucus carota HOM05D000870 ORTHO05D000715 7.2e-07 59.7 300 21.7
HPP92_007992 Vanilla planifolia HOM05D000870 ORTHO05D000715 7.2e-07 59.7 311 22.2
HPP92_021858 Vanilla planifolia HOM05D000870 ORTHO05D000715 9.4e-07 59.3 148 29.1
RcHm_v2.0_Chr5g0024041 Rosa chinensis HOM05D000870 ORTHO05D000715 1.2e-06 58.9 302 21.9
CSS0023067 Camellia sinensis var. sinensis HOM05D000870 ORTHO05D000715 1.6e-06 58.5 300 21.3
HanXRQChr13g0408871 Helianthus annuus HOM05D000870 ORTHO05D000715 1.6e-06 58.5 299 22.4
Potri.010G211300 Populus trichocarpa HOM05D000870 ORTHO05D000715 1.6e-06 58.5 297 22.2
EL10Ac7g17491 Beta vulgaris HOM05D002567 ORTHO05D007435 2.1e-06 58.2 33 81.8
FvH4_3g14571 Fragaria vesca HOM05D000870 ORTHO05D000715 2.1e-06 58.2 301 20.9
FAN11G3865 Fragaria x ananassa HOM05D000870 ORTHO05D000715 2.1e-06 58.2 301 20.9
Os01g0130000 Oryza sativa ssp. japonica HOM05D000870 ORTHO05D000715 2.1e-06 58.2 299 21.4
TAR627G0727 Trochodendron aralioides HOM05D000870 ORTHO05D000715 2.1e-06 58.2 301 22.6
Dinv42468 Davidia involucrata HOM05D000870 ORTHO05D000715 2.7e-06 57.8 182 27.5
Lsat_1_v5_gn_5_86321 Lactuca sativa HOM05D000295 ORTHO05D001778 2.7e-06 57.8 36 77.8
Lj1g0016343 Lotus japonicus HOM05D000870 ORTHO05D000715 2.7e-06 57.8 297 24.2
Pp3c16_11060 Physcomitrium patens HOM05D000870 ORTHO05D000715 2.7e-06 57.8 323 22.0
AUR62043266 Chenopodium quinoa HOM05D003402 ORTHO05D003939 3.6e-06 57.4 41 70.7
Cre03.g160550 Chlamydomonas reinhardtii HOM05D000870 ORTHO05D000715 3.6e-06 57.4 306 21.9
Eucgr.G02893 Eucalyptus grandis HOM05D000870 ORTHO05D000715 3.6e-06 57.4 321 24.9
RcHm_v2.0_Chr1g0365671 Rosa chinensis HOM05D000870 ORTHO05D000715 3.6e-06 57.4 339 24.5
GSVIVG01036746001 Vitis vinifera HOM05D000870 ORTHO05D000715 3.6e-06 57.4 297 21.5
MSTRG.13086 Avicennia marina HOM05D000870 ORTHO05D000715 4.7e-06 57.0 300 21.0
Cpa.g.sc32.72 Carica papaya HOM05D000870 ORTHO05D000715 4.7e-06 57.0 150 26.7
ECA236G4328 Erigeron canadensis HOM05D000870 ORTHO05D000715 6.1e-06 56.6 300 20.7
Migut.M01512 Erythranthe guttata HOM05D000870 ORTHO05D000715 6.1e-06 56.6 301 22.3
FAN11G1640 Fragaria x ananassa HOM05D000870 ORTHO05D000715 6.1e-06 56.6 323 21.1
Hma1.2p1_0402F.1_g145051 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 6.1e-06 56.6 297 23.9
Hma1.2p1_1483F.1_g286260 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 6.1e-06 56.6 297 23.9
Solyc05g054730.3 Solanum lycopersicum HOM05D000870 ORTHO05D000715 6.1e-06 56.6 297 22.2
Sopen05g033200 Solanum pennellii HOM05D000870 ORTHO05D000715 6.1e-06 56.6 297 22.2
Cre03.g160800 Chlamydomonas reinhardtii HOM05D000870 ORTHO05D000715 8.0e-06 56.2 305 21.3
FvH4_7g21220 Fragaria vesca HOM05D000870 ORTHO05D000715 8.0e-06 56.2 321 23.4
FAN03G1595 Fragaria x ananassa HOM05D000870 ORTHO05D000715 8.0e-06 56.2 321 23.4
FAN06G4451 Fragaria x ananassa HOM05D000870 ORTHO05D000715 8.0e-06 56.2 321 23.4
Lalb_Chr04g0257941 Lupinus albus HOM05D000870 ORTHO05D000715 8.0e-06 56.2 297 23.9
Sc08g0003310 Simmondsia chinensis HOM05D000870 ORTHO05D000715 8.0e-06 56.2 301 22.6


User provided reference genes

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