Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3325 Cannabis sativa HOM05D007701 ORTHO05D006440 3.7e-60 235.0 144 100.0
Ciclev10022800m.g Citrus clementina HOM05D007701 ORTHO05D006440 8.1e-23 110.9 144 53.5
QL12p024168 Quercus lobata HOM05D007701 ORTHO05D006440 2.9e-20 102.4 140 50.0
Potri.002G207500 Populus trichocarpa HOM05D007701 ORTHO05D006440 1.1e-19 100.5 145 51.7
Manes.05G068100 Manihot esculenta HOM05D007701 ORTHO05D006440 7.1e-19 97.8 148 50.0
Prupe.8G252700 Prunus persica HOM05D007701 ORTHO05D006440 7.1e-19 97.8 140 52.9
CiPaw.07G100300 Carya illinoinensis HOM05D007701 ORTHO05D006440 9.3e-19 97.4 140 51.4
Potri.014G135100 Populus trichocarpa HOM05D007701 ORTHO05D006440 3.0e-17 92.4 141 48.9
Hma1.2p1_0209F.1_g089060 Hydrangea macrophylla HOM05D007701 ORTHO05D006440 4.3e-16 88.6 145 45.5
Thecc.01G290700 Theobroma cacao HOM05D007701 ORTHO05D006440 1.6e-15 86.7 140 46.4
Gohir.D11G122900 Gossypium hirsutum HOM05D007701 ORTHO05D006440 6.2e-15 84.7 104 58.7
Gorai.007G131800 Gossypium raimondii HOM05D007701 ORTHO05D006440 6.2e-15 84.7 104 58.7
Nitab4.5_0004150g0050 Nicotiana tabacum HOM05D007701 ORTHO05D006440 1.4e-14 83.6 83 60.2
Nitab4.5_0002093g0180 Nicotiana tabacum HOM05D000530 ORTHO05D000621 3.1e-14 82.4 122 47.5
PGSC0003DMG400031864 Solanum tuberosum HOM05D007701 ORTHO05D006440 5.3e-14 81.6 108 50.9
CAN.G2895.2 Capsicum annuum HOM05D007701 ORTHO05D006440 6.9e-14 81.3 108 50.9
Gohir.A11G118000 Gossypium hirsutum HOM05D007701 ORTHO05D006440 6.9e-14 81.3 102 53.9
Solyc09g074450.1 Solanum lycopersicum HOM05D007701 ORTHO05D006440 1.2e-13 80.5 99 51.5
Dinv44434 Davidia involucrata HOM05D007701 ORTHO05D006440 1.5e-13 80.1 107 54.2
Gohir.A08G072500 Gossypium hirsutum HOM05D007701 ORTHO05D006440 1.5e-13 80.1 145 44.1
Sopen09g029300 Solanum pennellii HOM05D007701 ORTHO05D006440 3.4e-13 79.0 104 51.0
CAN.G426.28 Capsicum annuum HOM05D007701 ORTHO05D006440 7.6e-13 77.8 104 51.9
Ca_10375_v3 Cicer arietinum L. HOM05D007701 ORTHO05D006440 9.9e-13 77.4 139 44.6
Medtr1g088970 Medicago truncatula HOM05D007701 ORTHO05D006440 9.9e-13 77.4 135 43.7
Gohir.D08G080500 Gossypium hirsutum HOM05D007701 ORTHO05D006440 1.3e-12 77.0 145 43.4
Duzib138G0471 Durio zibethinus HOM05D007701 ORTHO05D006440 1.7e-12 76.6 139 44.6
Haze_01050 Corylus avellana HOM05D007701 ORTHO05D006440 3.8e-12 75.5 107 50.5
Hma1.2p1_0078F.1_g040840 Hydrangea macrophylla HOM05D007701 ORTHO05D006440 3.8e-12 75.5 103 50.5
Lj5g0017437 Lotus japonicus HOM05D007701 ORTHO05D006440 4.9e-12 75.1 129 47.3
Glyma.02G152500 Glycine max HOM05D007701 ORTHO05D006440 8.4e-12 74.3 129 45.7
Cfa015502 Carpinus fangiana HOM05D007701 ORTHO05D006440 1.1e-11 73.9 148 43.2
TWI14G1041 Tripterygium wilfordii HOM05D007701 ORTHO05D006440 1.1e-11 73.9 103 49.5
TPR.G16944 Trifolium pratense HOM05D007701 ORTHO05D006440 1.4e-11 73.6 140 42.1
Gorai.004G085600 Gossypium raimondii HOM05D007701 ORTHO05D006440 2.4e-11 72.8 98 54.1
Aa31LG1G29360 Aethionema arabicum HOM05D011411 ORTHO05D006440 3.2e-11 72.4 112 48.2
Carub.0004s3065 Capsella rubella HOM05D011411 ORTHO05D006440 4.2e-11 72.0 112 48.2
Lalb_Chr02g0143101 Lupinus albus HOM05D007701 ORTHO05D006440 4.2e-11 72.0 129 45.0
CARHR143320 Cardamine hirsuta HOM05D011411 ORTHO05D006440 5.4e-11 71.6 113 46.9
Duzib151G0788 Durio zibethinus HOM05D007701 ORTHO05D006440 5.4e-11 71.6 142 42.3
AL39U10120 Arabidopsis lyrata HOM05D011411 ORTHO05D006440 7.1e-11 71.2 117 47.0
AL4G47520 Arabidopsis lyrata HOM05D011411 ORTHO05D006440 7.1e-11 71.2 117 47.0
Phvul.007G166400 Phaseolus vulgaris HOM05D007701 ORTHO05D006440 9.3e-11 70.9 128 44.5
Glyma.10G021700 Glycine max HOM05D007701 ORTHO05D006440 1.6e-10 70.1 129 43.4
Sopen11g019180 Solanum pennellii HOM05D000047 ORTHO05D000044 2.7e-10 69.3 67 58.2
COL.COLO4_08025 Corchorus olitorius HOM05D007701 ORTHO05D006440 6.0e-10 68.2 103 46.6
QL12p038321 Quercus lobata HOM05D007701 ORTHO05D006440 6.0e-10 68.2 126 42.1
Phvul.006G160600 Phaseolus vulgaris HOM05D007701 ORTHO05D006440 7.9e-10 67.8 105 44.8
Psat6g167920 Pisum sativum HOM05D007701 ORTHO05D006440 1.3e-09 67.0 74 60.8
Thhalv10001715m.g Eutrema salsugineum HOM05D011411 ORTHO05D006440 1.8e-09 66.6 107 47.7
Sp4g29850 Schrenkiella parvula HOM05D011411 ORTHO05D006440 3.0e-09 65.9 103 49.5
Thecc.04G276200 Theobroma cacao HOM05D007701 ORTHO05D006440 3.9e-09 65.5 139 43.2
Sabra10G0031300 Salix brachista HOM05D007701 ORTHO05D006440 5.1e-09 65.1 95 51.6
C04p00020 Brassica napus HOM05D011411 ORTHO05D006440 1.1e-08 63.9 103 48.5
Migut.D00227 Erythranthe guttata HOM05D007701 ORTHO05D006440 1.1e-08 63.9 82 52.4
Glyma.15G098700 Glycine max HOM05D007701 ORTHO05D006440 1.1e-08 63.9 106 45.3
Glyma.13G214500 Glycine max HOM05D007701 ORTHO05D006440 1.5e-08 63.5 107 44.9
Dinv38332 Davidia involucrata HOM05D007701 ORTHO05D006440 3.3e-08 62.4 105 41.0
TWI59G1240 Tripterygium wilfordii HOM05D007701 ORTHO05D006440 3.3e-08 62.4 109 49.5
BcaC02g12535 Brassica carinata HOM05D011411 ORTHO05D006440 4.3e-08 62.0 103 47.6
BolC4t21649H Brassica oleracea HOM05D011411 ORTHO05D006440 4.3e-08 62.0 103 47.6
COL.COLO4_13938 Corchorus olitorius HOM05D007701 ORTHO05D006440 5.6e-08 61.6 97 48.5
AT2G47930 Arabidopsis thaliana HOM05D011411 ORTHO05D006440 7.4e-08 61.2 117 44.4
Lalb_Chr06g0163321 Lupinus albus HOM05D007701 ORTHO05D006440 7.4e-08 61.2 107 44.9
Eucgr.K03437 Eucalyptus grandis HOM05D007701 ORTHO05D006440 1.3e-07 60.5 85 47.1
Ca_00580_v3 Cicer arietinum L. HOM05D007701 ORTHO05D006440 1.6e-07 60.1 81 46.9
Potri.010G031700 Populus trichocarpa HOM05D007701 ORTHO05D006440 1.6e-07 60.1 94 48.9
Medtr2g020370 Medicago truncatula HOM05D007701 ORTHO05D006440 2.1e-07 59.7 107 38.3
CiPaw.08G100300 Carya illinoinensis HOM05D007701 ORTHO05D006440 2.8e-07 59.3 95 46.3
Lalb_Chr20g0118191 Lupinus albus HOM05D007701 ORTHO05D006440 2.8e-07 59.3 88 48.9
Lalb_Chr15g0087071 Lupinus albus HOM05D007701 ORTHO05D006440 3.7e-07 58.9 88 46.6
A05p00100 Brassica napus HOM05D011411 ORTHO05D006440 4.8e-07 58.5 103 46.6
BraA05t19006Z Brassica rapa HOM05D011411 ORTHO05D006440 4.8e-07 58.5 103 46.6
TPR.G1519 Trifolium pratense HOM05D007701 ORTHO05D006440 6.2e-07 58.2 90 45.6
BolC4t28784H Brassica oleracea HOM05D000915 ORTHO05D001662 1.1e-06 57.4 102 47.1
TWI09G0131 Tripterygium wilfordii HOM05D007701 ORTHO05D006440 1.1e-06 57.4 138 41.3
SGA_v2.0_scaffold11G05758 Striga asiatica HOM05D007701 ORTHO05D006440 1.4e-06 57.0 127 40.2
BcaC02g06998 Brassica carinata HOM05D011411 ORTHO05D006440 1.8e-06 56.6 102 46.1
Potri.008G195700 Populus trichocarpa HOM05D007701 ORTHO05D006440 1.8e-06 56.6 140 38.6
SalBow6G6224 Salvia bowleyana HOM05D007701 ORTHO05D006440 1.8e-06 56.6 106 46.2
Duzib212G0358 Durio zibethinus HOM05D007701 ORTHO05D006440 2.4e-06 56.2 141 38.3
Sc19g0004910 Simmondsia chinensis HOM05D007701 ORTHO05D006440 3.1e-06 55.8 97 42.3
Lj5g0018160 Lotus japonicus HOM05D000625 ORTHO05D000467 4.0e-06 55.5 91 47.3
Manes.03G190500 Manihot esculenta HOM05D007701 ORTHO05D006440 4.0e-06 55.5 139 38.8
Duzib133G0397 Durio zibethinus HOM05D007701 ORTHO05D006440 5.3e-06 55.1 57 59.6


User provided reference genes

Program Settings