Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 3.2e-216 755.0 434 100.0
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 2.8e-151 539.3 433 66.5
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 1.4e-147 526.9 417 66.4
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 7.6e-141 504.6 431 61.9
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 1.6e-138 496.9 406 63.5
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 7.8e-138 494.6 430 62.1
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 8.7e-137 491.1 405 62.0
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 3.3e-136 489.2 431 60.6
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 5.6e-136 488.4 399 63.2
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 7.3e-136 488.0 439 59.7
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.1e-134 482.6 432 62.0
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 6.9e-134 481.5 432 61.3
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 9.0e-134 481.1 405 61.7
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 1.5e-133 480.3 432 59.5
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 2.0e-133 479.9 433 59.6
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.4e-133 479.2 432 62.3
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 3.4e-133 479.2 430 62.3
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 7.6e-133 478.0 433 61.4
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 7.6e-133 478.0 430 60.9
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 9.9e-133 477.6 432 63.4
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 1.3e-132 477.2 408 63.2
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 2.9e-132 476.1 389 63.8
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 3.8e-132 475.7 401 61.8
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 3.8e-132 475.7 400 62.2
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 3.8e-132 475.7 404 60.9
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 4.9e-132 475.3 430 60.2
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 6.4e-132 474.9 437 57.9
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 8.4e-132 474.6 435 63.4
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 8.4e-132 474.6 433 58.7
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 1.9e-131 473.4 463 58.7
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 3.2e-131 472.6 430 58.8
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 9.3e-131 471.1 430 58.6
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 9.3e-131 471.1 436 58.3
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 7.9e-130 468.0 439 58.3
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 2.3e-129 466.5 438 57.3
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 3.0e-129 466.1 435 62.3
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 8.7e-129 464.5 412 60.9
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 4.3e-128 462.2 442 57.7
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 5.6e-128 461.8 384 64.6
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 7.4e-128 461.5 436 56.0
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 1.6e-127 460.3 404 59.9
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 4.0e-126 455.7 433 61.4
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.5e-125 453.8 391 59.8
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 8.4e-124 448.0 431 55.7
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.1e-123 447.6 389 61.2
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 1.9e-123 446.8 436 55.0
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 4.2e-123 445.7 431 55.0
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 4.2e-123 445.7 430 56.3
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 7.1e-123 444.9 436 56.0
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 1.3e-121 440.7 430 59.8
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 2.3e-121 439.9 445 53.9
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 6.7e-121 438.3 409 61.9
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 8.7e-121 438.0 394 58.1
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 2.5e-120 436.4 439 55.4
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 2.5e-120 436.4 409 66.3
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 4.3e-120 435.6 436 54.8
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 5.7e-120 435.3 409 62.6
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 7.4e-120 434.9 436 54.8
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 4.8e-119 432.2 405 56.3
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 6.2e-119 431.8 438 54.8
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 6.2e-119 431.8 379 59.9
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 2.4e-118 429.9 395 57.0
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 4.0e-118 429.1 438 55.3
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 4.0e-118 429.1 438 55.3
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 6.9e-118 428.3 438 54.8
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 9.0e-118 427.9 392 56.9
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 2.0e-117 426.8 440 53.9
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 2.6e-117 426.4 433 53.8
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 2.6e-117 426.4 438 54.6
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 2.6e-117 426.4 438 54.6
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 1.0e-116 424.5 429 54.1
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 2.2e-116 423.3 399 60.7
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 2.9e-116 422.9 429 54.1
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 3.8e-116 422.5 415 56.1
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.1e-115 421.0 414 56.3
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 1.4e-115 420.6 396 58.1
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 4.2e-115 419.1 469 52.9
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 7.1e-115 418.3 397 57.9
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 9.3e-115 417.9 404 56.9
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 6.1e-114 415.2 403 56.3
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 1.3e-113 414.1 402 55.7
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 3.9e-113 412.5 395 59.5
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 6.7e-113 411.8 431 55.9
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 9.7e-112 407.9 442 50.5
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 1.6e-111 407.1 391 62.7
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 8.2e-111 404.8 363 61.4
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 6.9e-110 401.7 376 59.6
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 9.0e-110 401.4 380 57.9
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 9.0e-110 401.4 406 53.0
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.7e-108 397.1 406 52.7
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 6.5e-108 395.2 348 59.8
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 6.5e-108 395.2 406 52.5
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 1.4e-107 394.0 389 57.1
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 4.2e-107 392.5 366 57.7
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 1.6e-106 390.6 392 52.8
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 7.9e-106 388.3 395 53.2
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 2.3e-105 386.7 353 60.1
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 5.1e-105 385.6 416 53.4
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 2.6e-96 356.7 474 46.8
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.7e-95 354.0 345 58.0
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 6.3e-95 352.1 420 48.8
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 5.7e-80 302.4 267 61.0
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 1.1e-78 298.1 317 58.0
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 9.1e-70 268.5 435 40.5
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 3.8e-68 263.1 453 40.4
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 3.8e-68 263.1 453 40.4
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 1.2e-66 258.1 384 41.7
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 3.6e-66 256.5 437 38.2
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 2.9e-60 236.9 155 76.1
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 9.2e-38 162.2 420 32.9
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 2.6e-32 144.1 131 58.8
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 3.2e-30 137.1 141 49.6
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 6.6e-28 129.4 118 56.8
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 4.0e-25 120.2 284 33.5
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 2.9e-15 87.4 116 44.0
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 3.8e-15 87.0 167 39.5
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 4.2e-14 83.6 51 74.5
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 7.1e-14 82.8 48 77.1
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 7.1e-14 82.8 48 77.1
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 1.3e-12 78.6 147 36.7
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 6.7e-12 76.3 49 67.3
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 2.0e-08 64.7 85 48.2
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 1.7e-07 61.6 50 54.0
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.8e-07 60.5 85 48.2
Cfa027053 Carpinus fangiana HOM05D006541 ORTHO05D124901 5.5e-06 56.6 41 51.2


User provided reference genes

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