Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 3.3e-209 731.5 372 100.0
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 6.8e-122 441.4 387 63.8
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 1.1e-119 434.1 384 63.5
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 7.0e-119 431.4 384 63.3
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 2.5e-116 422.9 390 60.8
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 4.2e-116 422.2 389 62.5
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 3.6e-115 419.1 381 61.9
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 2.6e-113 412.9 390 60.5
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.4e-113 412.1 395 60.0
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 5.7e-113 411.8 387 60.7
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 7.5e-113 411.4 394 59.6
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.3e-112 410.6 394 59.6
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 1.8e-111 406.8 383 59.5
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 9.2e-111 404.4 380 61.1
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 1.6e-110 403.7 376 62.0
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.6e-110 403.7 394 59.4
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 9.5e-108 394.4 400 59.8
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 1.6e-107 393.7 385 59.5
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.4e-106 390.6 391 60.9
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 9.8e-105 384.4 383 58.7
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 9.2e-103 377.9 372 59.4
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 9.2e-103 377.9 389 58.1
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.0e-102 376.7 385 57.1
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 2.7e-102 376.3 393 58.3
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 7.3e-100 368.2 369 58.0
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 7.3e-100 368.2 385 55.6
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 8.9e-98 361.3 377 56.2
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.2e-96 356.7 377 56.0
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 6.4e-96 355.1 391 56.5
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.6e-94 350.5 385 54.8
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 2.7e-94 349.7 387 53.5
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 7.8e-94 348.2 394 54.3
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.1e-92 344.4 387 56.6
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.1e-92 344.4 387 56.6
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 3.3e-92 342.8 371 56.3
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.8e-91 339.7 379 55.1
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 3.6e-91 339.3 384 53.9
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 4.7e-91 339.0 402 54.2
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.4e-89 332.8 371 53.6
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.2e-88 330.1 375 53.1
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 4.1e-87 325.9 460 45.9
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 7.1e-87 325.1 379 51.2
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 2.7e-86 323.2 343 56.6
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 4.6e-86 322.4 383 53.0
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 4.6e-86 322.4 384 50.0
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.0e-85 321.2 389 49.6
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.3e-85 320.9 399 50.9
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 3.0e-85 319.7 386 49.5
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 6.6e-85 318.5 384 49.5
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.1e-84 317.8 371 51.2
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.5e-84 317.4 384 49.2
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 3.3e-84 316.2 389 48.8
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 9.5e-84 314.7 392 50.5
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 1.2e-83 314.3 379 52.0
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 6.2e-83 312.0 390 49.7
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 4.0e-82 309.3 376 51.1
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 8.9e-82 308.1 371 49.9
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 8.9e-82 308.1 368 53.0
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.2e-81 307.8 394 49.2
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 1.5e-81 307.4 377 47.5
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 6.4e-80 302.0 400 48.2
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 2.7e-78 296.6 370 47.3
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 3.5e-78 296.2 388 47.7
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 4.6e-78 295.8 370 49.2
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 7.8e-78 295.0 376 50.0
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 1.0e-77 294.7 373 47.5
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.0e-77 294.7 404 47.5
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.3e-77 294.3 375 47.2
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 2.3e-77 293.5 380 48.4
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 5.1e-77 292.4 383 48.3
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 6.6e-77 292.0 378 47.4
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.1e-76 291.2 373 47.2
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 1.5e-76 290.8 436 46.8
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 1.5e-76 290.8 370 47.0
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 3.3e-76 289.7 394 47.5
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 2.1e-75 287.0 389 46.0
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 2.8e-75 286.6 394 45.9
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 8.1e-75 285.0 390 45.1
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 5.2e-74 282.3 393 47.8
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 9.0e-74 281.6 387 48.6
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 9.0e-74 281.6 392 46.7
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 3.4e-73 279.6 392 46.2
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 5.8e-73 278.9 395 45.6
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.7e-72 277.3 395 45.6
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 2.9e-72 276.6 340 49.7
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 6.4e-72 275.4 418 47.6
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 2.4e-71 273.5 389 45.5
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.4e-71 273.5 403 44.4
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 3.0e-69 266.5 371 46.4
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 5.1e-69 265.8 366 47.3
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 6.6e-69 265.4 369 46.9
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 4.0e-66 256.1 338 46.4
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 2.0e-65 253.8 382 46.3
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.4e-63 247.7 260 52.7
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 1.9e-63 247.3 407 46.2
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 2.4e-63 246.9 390 42.1
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 8.1e-59 231.9 196 62.2
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 1.4e-58 231.1 383 45.2
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 1.5e-57 227.6 354 43.5
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.3e-56 224.6 393 41.5
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.3e-56 224.6 366 39.6
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 3.0e-53 213.4 391 39.6
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.1e-52 211.5 250 54.0
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.9e-52 210.7 362 41.4
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 5.6e-52 209.1 383 40.2
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 2.1e-51 207.2 216 57.4
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 2.6e-49 200.3 297 46.8
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 2.6e-49 200.3 373 39.1
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.3e-48 198.0 212 54.2
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.3e-48 198.0 294 45.6
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 2.9e-48 196.8 367 37.3
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 1.9e-47 194.1 364 39.3
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 3.5e-46 189.9 222 49.5
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 6.0e-46 189.1 344 37.2
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 8.7e-45 185.3 208 52.9
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 1.8e-42 177.6 378 34.1
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 2.6e-41 173.7 140 56.4
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 1.0e-40 171.8 197 48.7
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 1.1e-39 168.3 353 35.7
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 1.4e-39 167.9 350 33.4
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 1.9e-36 157.5 366 36.1
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 2.2e-35 154.1 365 33.7
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 6.3e-35 152.5 124 65.3
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 4.5e-33 146.4 371 31.5
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 1.4e-29 134.8 196 44.9
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 3.0e-29 133.7 249 43.0
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 9.7e-28 128.6 115 65.2
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.3e-19 101.7 164 36.0
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 1.8e-18 97.8 156 45.5
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 3.1e-18 97.1 307 29.6
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 4.1e-18 96.7 147 40.8
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 3.5e-17 93.6 153 40.5
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 4.5e-17 93.2 168 34.5
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.7e-16 91.3 161 32.9
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 2.9e-16 90.5 365 26.3
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 5.0e-16 89.7 163 34.4
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 4.2e-15 86.7 105 43.8
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.0e-13 82.0 165 30.9
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 2.7e-09 67.4 165 30.3
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 2.7e-09 67.4 165 30.3
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 2.7e-09 67.4 165 30.3
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 2.7e-09 67.4 165 30.3
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 2.7e-09 67.4 165 30.3
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 2.7e-09 67.4 170 29.4
SMO367G1253 Selaginella moellendorffii HOM05D005715 ORTHO05D007160 2.7e-09 67.4 205 25.4
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 3.5e-09 67.0 165 29.7
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 5.9e-09 66.2 165 29.7
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 2.2e-08 64.3 103 42.7
CDE04G1528 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 8.5e-08 62.4 243 25.5
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 2.7e-06 57.4 229 25.3
Nn4g22410 Nelumbo nucifera HOM05D001735 ORTHO05D001640 2.7e-06 57.4 164 26.8


User provided reference genes

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