Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 2.4e-87 325.5 164 100.0
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 5.0e-85 317.8 164 97.6
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 1.1e-71 273.5 164 81.7
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.6e-70 268.9 164 79.9
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 3.5e-70 268.5 164 79.3
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 4.5e-70 268.1 164 79.3
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 1.3e-69 266.5 164 78.0
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 1.3e-69 266.5 164 77.4
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 1.7e-69 266.2 164 78.0
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 1.7e-69 266.2 164 77.4
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 3.8e-69 265.0 164 78.0
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.1e-68 263.5 164 79.3
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 2.5e-68 262.3 164 79.3
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 3.2e-68 261.9 164 78.7
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 4.2e-68 261.5 164 77.4
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 4.2e-68 261.5 164 77.4
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 5.5e-68 261.2 164 78.0
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 5.5e-68 261.2 164 76.2
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 5.5e-68 261.2 164 76.8
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 7.2e-68 260.8 164 76.2
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 9.4e-68 260.4 164 76.2
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 9.4e-68 260.4 164 76.2
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 9.4e-68 260.4 164 79.3
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 9.4e-68 260.4 164 78.0
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 1.2e-67 260.0 164 76.8
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 1.2e-67 260.0 164 76.2
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 1.2e-67 260.0 164 76.8
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.2e-67 260.0 164 76.2
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.6e-67 259.6 159 79.2
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 1.6e-67 259.6 164 75.6
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 1.6e-67 259.6 164 78.0
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 1.6e-67 259.6 166 77.1
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.1e-67 259.2 164 75.0
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.1e-67 259.2 164 75.0
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 2.7e-67 258.8 164 77.4
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 3.6e-67 258.5 164 76.8
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 3.6e-67 258.5 164 76.8
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 3.6e-67 258.5 164 76.8
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 3.6e-67 258.5 164 76.2
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 4.7e-67 258.1 164 75.6
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 6.1e-67 257.7 164 75.0
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 6.1e-67 257.7 164 75.6
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 8.0e-67 257.3 164 73.2
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 1.0e-66 256.9 164 75.0
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 1.4e-66 256.5 164 76.2
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 1.4e-66 256.5 164 74.4
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 1.8e-66 256.1 159 76.7
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 2.3e-66 255.8 164 76.2
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 2.3e-66 255.8 164 72.6
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 2.3e-66 255.8 164 76.2
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 2.3e-66 255.8 164 74.4
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 3.0e-66 255.4 164 72.6
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 3.0e-66 255.4 166 75.9
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 3.0e-66 255.4 162 75.3
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 3.0e-66 255.4 164 76.8
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 4.0e-66 255.0 164 76.8
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 74.4
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 75.6
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 72.6
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 75.0
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 75.6
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 74.4
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 6.7e-66 254.2 164 75.0
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.2e-65 253.4 166 75.3
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 1.5e-65 253.1 188 68.6
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 1.5e-65 253.1 164 72.0
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 74.4
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 74.4
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 73.8
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 3.3e-65 251.9 164 73.8
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 9.7e-65 250.4 164 72.6
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 73.8
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 1.7e-64 249.6 164 74.4
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 2.8e-64 248.8 164 73.2
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 3.7e-64 248.4 164 73.2
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 71.3
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 72.0
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 72.0
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 71.3
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 72.6
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 8.2e-64 247.3 164 72.6
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 73.2
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 72.6
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 1.4e-63 246.5 159 74.8
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 1.4e-63 246.5 164 73.2
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 72.6
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 5.3e-63 244.6 164 70.7
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 72.0
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 70.7
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 7.7e-62 240.7 185 66.5
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 2.2e-61 239.2 173 67.6
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 2.2e-61 239.2 193 64.2
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 2.2e-61 239.2 164 70.7
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 5.0e-61 238.0 164 70.1
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 67.1
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 67.7
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 5.5e-60 234.6 174 69.5
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 68.9
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 9.4e-60 233.8 164 68.9
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 2.1e-59 232.6 161 67.1
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 2.1e-59 232.6 191 61.3
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 6.8e-58 227.6 164 68.9
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 8.8e-58 227.3 164 64.0
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 1.5e-57 226.5 164 66.5
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.3e-56 223.4 171 65.5
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 4.8e-56 221.5 162 63.0
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 1.5e-49 199.9 133 71.4
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 7.5e-49 197.6 169 62.1
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 2.4e-47 192.6 221 51.1
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 5.4e-47 191.4 132 69.7
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 4.5e-46 188.3 164 53.0
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 2.9e-45 185.7 164 57.9
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 1.1e-44 183.7 167 56.9
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 1.5e-44 183.3 170 55.9
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 1.5e-44 183.3 170 55.9
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 1.4e-39 166.8 117 70.9
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 1.8e-39 166.4 168 48.2
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 3.9e-37 158.7 169 47.9
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 8.9e-34 147.5 165 46.1
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.2e-33 147.1 98 73.5
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 2.6e-33 146.0 98 71.4
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 7.5e-33 144.4 82 84.1
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 2.4e-31 139.4 83 79.5
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 2.4e-31 139.4 122 49.2
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 2.4e-31 139.4 161 47.2
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 4.6e-30 135.2 91 75.8
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 1.0e-29 134.0 94 71.3
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 1.0e-29 134.0 82 78.0
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 5.6e-28 128.3 82 73.2
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 7.5e-25 117.9 117 50.4
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 1.1e-23 114.0 98 63.3
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 2.1e-22 109.8 66 75.8
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 5.6e-20 101.7 78 61.5
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 2.8e-19 99.4 58 72.4
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 6.8e-18 94.7 87 55.2
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 1.2e-17 94.0 118 36.4
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 2.7e-14 82.8 46 76.1
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 4.6e-14 82.0 47 74.5
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 6.0e-14 81.6 46 80.4
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 3.9e-13 79.0 51 70.6
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 1.1e-12 77.4 47 68.1
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 2.1e-11 73.2 48 75.0
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 8.1e-11 71.2 77 53.2
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 2.6e-09 66.2 51 66.7


User provided reference genes

Program Settings