Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 1.2e-110 403.3 210 100.0
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 1.6e-72 276.6 206 68.9
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 2.1e-72 276.2 200 72.0
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 6.2e-72 274.6 200 71.5
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 8.1e-72 274.2 206 68.4
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.3e-71 272.7 200 71.5
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 3.1e-71 272.3 206 67.0
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 2.0e-70 269.6 202 68.3
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 3.4e-70 268.9 206 68.4
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 3.7e-69 265.4 206 68.0
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.1e-68 263.8 205 66.8
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 1.4e-68 263.5 199 67.8
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 4.1e-68 261.9 206 64.1
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 7.1e-68 261.2 206 66.5
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.2e-67 260.4 199 67.8
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 2.3e-66 256.1 208 69.2
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 5.1e-66 255.0 206 65.5
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 5.1e-66 255.0 206 65.5
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 1.5e-65 253.4 191 67.0
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.9e-65 253.1 202 63.9
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.2e-64 250.4 206 64.1
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.2e-64 250.4 202 63.4
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 4.7e-64 248.4 200 64.0
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 6.2e-64 248.1 207 62.3
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 6.2e-64 248.1 206 63.1
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 6.2e-64 248.1 182 69.2
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 8.1e-64 247.7 202 64.9
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 1.4e-63 246.9 208 62.5
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.1e-63 245.7 182 70.9
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 8.9e-63 244.2 204 62.7
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 1.2e-62 243.8 191 64.4
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 4.4e-62 241.9 200 62.0
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 4.4e-62 241.9 196 63.8
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 7.6e-62 241.1 204 61.3
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 1.7e-61 240.0 197 62.9
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.7e-61 240.0 198 61.1
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.2e-61 239.6 199 63.3
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.2e-61 239.6 199 63.8
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 2.2e-61 239.6 203 62.1
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 2.9e-61 239.2 192 65.6
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 6.4e-61 238.0 199 63.3
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 9.3e-60 234.2 206 59.2
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 9.3e-60 234.2 198 60.1
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.2e-59 233.8 208 61.1
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.6e-59 233.4 205 59.5
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 1.6e-59 233.4 199 61.8
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 3.5e-59 232.3 180 67.2
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 4.6e-59 231.9 198 62.1
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 2.3e-58 229.6 205 58.0
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 3.0e-58 229.2 206 59.2
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 6.6e-58 228.0 203 60.6
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 8.7e-58 227.6 209 56.0
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 1.5e-57 226.9 209 58.9
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.9e-57 226.5 206 61.2
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 2.5e-57 226.1 208 59.6
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 3.3e-57 225.7 199 60.3
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 5.6e-57 224.9 209 55.5
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 7.3e-57 224.6 212 59.0
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 7.3e-57 224.6 195 60.5
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 2.1e-56 223.0 202 55.4
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 6.2e-56 221.5 209 54.5
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 6.2e-56 221.5 202 55.4
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 8.1e-56 221.1 208 55.3
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.1e-55 220.7 200 57.5
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.1e-55 220.7 207 59.4
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.8e-55 219.9 200 57.0
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 2.4e-55 219.5 205 57.1
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 3.1e-55 219.2 198 59.1
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.5e-54 216.9 206 54.9
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 2.0e-54 216.5 209 54.1
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 7.6e-54 214.5 203 58.1
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 7.6e-54 214.5 199 54.3
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 7.6e-54 214.5 198 59.6
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.7e-53 213.4 213 54.0
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 9.3e-52 207.6 199 57.3
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 2.1e-51 206.5 168 63.1
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 2.7e-51 206.1 196 51.5
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 3.5e-51 205.7 201 55.2
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 4.6e-51 205.3 196 54.6
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 4.6e-51 205.3 196 54.6
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 6.0e-51 204.9 193 53.9
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 6.0e-51 204.9 201 56.7
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.0e-50 204.1 206 53.9
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 1.0e-50 204.1 196 55.1
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 1.3e-50 203.8 198 54.0
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.3e-50 203.8 201 53.7
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 1.7e-50 203.4 196 54.6
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 6.6e-50 201.4 196 53.6
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 1.1e-49 200.7 193 51.3
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 1.5e-49 200.3 196 54.6
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 1.1e-47 194.1 209 50.7
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.4e-47 193.7 139 68.3
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 3.1e-47 192.6 196 51.5
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 5.3e-47 191.8 196 50.5
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 2.0e-46 189.9 135 67.4
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 3.4e-46 189.1 219 47.9
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 5.8e-46 188.3 193 51.3
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 5.8e-46 188.3 219 47.9
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 9.9e-46 187.6 201 50.7
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 2.9e-45 186.0 188 49.5
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 2.9e-45 186.0 181 53.6
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 2.9e-45 186.0 198 52.0
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 6.4e-45 184.9 197 52.3
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 6.4e-45 184.9 201 50.7
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 1.1e-44 184.1 198 52.0
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 1.1e-44 184.1 198 52.0
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 1.4e-44 183.7 201 48.3
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 1.9e-44 183.3 188 52.1
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 2.4e-44 183.0 198 51.5
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 9.3e-44 181.0 192 46.4
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 1.2e-43 180.6 196 49.5
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 5.1e-42 175.3 197 49.7
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 5.8e-38 161.8 208 47.6
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 1.1e-36 157.5 202 46.0
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 3.0e-34 149.4 193 47.2
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 5.1e-34 148.7 204 41.2
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 2.1e-32 143.3 118 63.6
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 2.8e-32 142.9 204 39.7
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 2.8e-32 142.9 204 39.7
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 4.8e-32 142.1 110 66.4
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 3.1e-31 139.4 204 38.7
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.9e-29 132.9 205 41.0
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 8.4e-29 131.3 190 42.6
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 8.4e-29 131.3 85 75.3
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 1.2e-27 127.5 219 35.2
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 2.3e-26 123.2 205 41.0
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 5.1e-26 122.1 205 38.5
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 1.6e-24 117.1 190 37.9
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 9.0e-23 111.3 187 40.6
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 2.0e-22 110.2 181 38.7
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 5.0e-21 105.5 184 32.6
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 7.2e-20 101.7 171 40.4
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.0e-18 97.8 191 34.0
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 1.1e-17 94.4 189 33.3
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 3.1e-15 86.3 102 41.2
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 7.7e-14 81.6 105 41.0
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 3.8e-13 79.3 125 43.2
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 3.2e-12 76.3 215 26.5
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 7.2e-12 75.1 72 55.6
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.4e-10 70.9 50 66.0
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 2.2e-08 63.5 193 27.5
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 2.2e-08 63.5 159 28.3
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 9.1e-07 58.2 68 50.0
TPR.G31499 Trifolium pratense HOM05D000201 ORTHO05D016113 9.1e-07 58.2 50 58.0
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 2.6e-06 56.6 71 47.9
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 3.5e-06 56.2 68 47.1
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 3.5e-06 56.2 68 47.1
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 7.7e-06 55.1 62 50.0


User provided reference genes

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