Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 3.1e-53 211.5 103 100.0
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 8.6e-51 203.4 103 93.2
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 2.5e-50 201.8 103 93.2
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 3.3e-50 201.4 103 92.2
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 5.6e-50 200.7 103 93.2
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 5.6e-50 200.7 102 91.2
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 5.6e-50 200.7 103 90.3
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 1.2e-49 199.5 103 90.3
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 1.6e-49 199.1 103 91.3
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.1e-49 198.7 101 92.1
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 2.8e-49 198.4 103 88.3
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 3.6e-49 198.0 103 90.3
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 4.7e-49 197.6 103 89.3
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 6.1e-49 197.2 103 88.3
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 8.0e-49 196.8 103 87.4
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 8.0e-49 196.8 103 87.4
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 8.0e-49 196.8 101 91.1
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 1.0e-48 196.4 103 89.3
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 1.0e-48 196.4 103 89.3
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 2.3e-48 195.3 103 86.4
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 2.3e-48 195.3 103 88.3
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 3.1e-48 194.9 100 91.0
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 5.2e-48 194.1 112 83.9
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 5.2e-48 194.1 103 88.3
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 6.8e-48 193.7 103 87.4
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 6.8e-48 193.7 103 88.3
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 6.8e-48 193.7 101 89.1
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 6.8e-48 193.7 101 89.1
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 1.5e-47 192.6 103 87.4
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 2.0e-47 192.2 103 86.4
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 2.0e-47 192.2 103 85.4
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 2.0e-47 192.2 103 88.3
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 2.0e-47 192.2 103 86.4
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 2.6e-47 191.8 103 86.4
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 2.6e-47 191.8 99 88.9
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 5.8e-47 190.7 102 86.3
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 7.5e-47 190.3 103 87.4
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 7.5e-47 190.3 103 87.4
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 7.5e-47 190.3 103 87.4
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 7.5e-47 190.3 103 85.4
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 7.5e-47 190.3 103 86.4
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 9.8e-47 189.9 103 87.4
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.3e-46 189.5 103 86.4
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 2.9e-46 188.3 102 84.3
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 3.7e-46 188.0 102 83.3
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 4.9e-46 187.6 103 84.5
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 8.3e-46 186.8 101 87.1
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 8.3e-46 186.8 100 85.0
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 1.1e-45 186.4 100 84.0
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 1.1e-45 186.4 101 85.1
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 1.1e-45 186.4 107 85.0
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.1e-45 186.4 100 86.0
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.4e-45 186.0 100 86.0
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 1.9e-45 185.7 102 84.3
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 4.1e-45 184.5 100 85.0
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 5.4e-45 184.1 101 84.2
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 5.4e-45 184.1 102 84.3
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 7.0e-45 183.7 103 80.6
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 7.0e-45 183.7 114 78.1
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 7.0e-45 183.7 103 84.5
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 7.0e-45 183.7 102 82.4
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 2.0e-44 182.2 103 80.6
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 6.0e-44 180.6 101 82.2
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 7.8e-44 180.3 103 80.6
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 7.8e-44 180.3 99 84.8
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 7.8e-44 180.3 99 84.8
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 1.0e-43 179.9 101 79.2
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 1.0e-43 179.9 100 84.0
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 1.3e-43 179.5 102 81.4
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 2.3e-43 178.7 100 79.0
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 2.3e-43 178.7 99 80.8
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 2.3e-43 178.7 99 82.8
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 3.0e-43 178.3 105 82.9
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 3.9e-43 177.9 94 86.2
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 3.9e-43 177.9 101 79.2
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 5.0e-43 177.6 101 77.2
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 5.0e-43 177.6 100 80.0
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 5.0e-43 177.6 92 89.1
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 1.1e-42 176.4 98 80.6
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 1.1e-42 176.4 101 82.2
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 1.9e-42 175.6 100 77.0
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 1.9e-42 175.6 98 80.6
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 2.5e-42 175.3 99 78.8
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 2.5e-42 175.3 99 78.8
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 2.5e-42 175.3 99 78.8
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 2.5e-42 175.3 99 78.8
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 7.3e-42 173.7 101 81.2
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 9.5e-42 173.3 99 76.8
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 2.1e-41 172.2 99 77.8
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 2.1e-41 172.2 101 77.2
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 3.6e-41 171.4 98 77.6
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 3.6e-41 171.4 101 74.3
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 4.7e-41 171.0 98 77.6
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 4.7e-41 171.0 94 84.0
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 3.1e-40 168.3 94 83.0
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 1.2e-39 166.4 101 74.3
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.0e-35 153.3 100 67.0
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 1.7e-35 152.5 101 69.3
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 3.3e-34 148.3 92 69.6
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 3.6e-33 144.8 74 93.2
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 3.6e-33 144.8 71 93.0
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 6.2e-33 144.1 101 61.4
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.1e-32 143.3 101 61.4
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 1.8e-32 142.5 74 90.5
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.5e-31 139.4 74 86.5
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 2.6e-31 138.7 72 88.9
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 4.4e-31 137.9 99 55.6
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 1.7e-30 136.0 82 74.4
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 2.9e-30 135.2 100 57.0
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 6.4e-30 134.0 71 87.3
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 1.4e-29 132.9 75 80.0
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 5.4e-29 131.0 71 87.3
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 7.1e-29 130.6 74 83.8
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 1.6e-28 129.4 71 83.1
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 4.6e-28 127.9 72 80.6
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 2.3e-27 125.6 99 53.5
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 1.6e-25 119.4 69 76.8
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 4.0e-24 114.8 76 63.2
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 1.3e-22 109.8 104 56.7
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 3.2e-21 105.1 64 78.1
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 6.0e-20 100.9 64 78.1
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.2e-12 76.6 54 61.1
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 2.1e-09 65.9 40 72.5
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 4.8e-09 64.7 34 88.2
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 1.4e-08 63.2 34 82.4
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 2.4e-08 62.4 42 66.7
A10p26800 Brassica napus HOM05D007008 ORTHO05D008622 7.6e-07 57.4 36 75.0
arahy.Tifrunner.gnm1.ann1.6H1017 Arachis hypogaea HOM05D007008 ORTHO05D008622 2.2e-06 55.8 31 80.6


User provided reference genes

Program Settings