Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 2.1e-85 319.3 205 100.0
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 1.4e-81 306.6 205 97.6
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 5.7e-38 161.8 140 66.4
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 3.7e-37 159.1 139 66.2
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.8e-36 156.8 132 66.7
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 9.1e-36 154.5 136 66.9
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.2e-35 154.1 145 62.1
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.5e-35 152.5 138 62.3
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 4.5e-35 152.1 142 63.4
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 7.7e-35 151.4 131 63.4
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 7.7e-35 151.4 138 63.0
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 2.9e-34 149.4 130 62.3
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 6.5e-34 148.3 133 63.2
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 6.5e-34 148.3 128 62.5
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 6.5e-34 148.3 141 63.1
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 8.5e-34 147.9 139 58.3
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 8.5e-34 147.9 164 57.3
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.1e-33 147.5 140 60.0
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 1.9e-33 146.7 124 64.5
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 3.2e-33 146.0 135 63.0
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.2e-33 145.6 121 66.1
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 7.2e-33 144.8 132 63.6
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 2.1e-32 143.3 130 61.5
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 2.7e-32 142.9 137 59.1
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 3.6e-32 142.5 132 62.9
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 3.6e-32 142.5 139 59.0
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.1e-32 141.7 133 58.6
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 8.0e-32 141.4 132 62.9
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 8.0e-32 141.4 133 58.6
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 8.0e-32 141.4 138 58.7
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 8.0e-32 141.4 134 57.5
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 1.0e-31 141.0 133 58.6
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 1.0e-31 141.0 147 55.1
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 1.8e-31 140.2 145 56.6
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 4.0e-31 139.0 140 57.1
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 4.0e-31 139.0 126 61.1
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 4.0e-31 139.0 127 59.1
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 4.0e-31 139.0 150 54.0
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.7e-31 138.3 142 55.6
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 8.8e-31 137.9 139 59.0
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 1.2e-30 137.5 159 56.6
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.2e-30 137.5 120 65.0
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 3.3e-30 136.0 134 59.0
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 3.3e-30 136.0 141 55.3
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 3.3e-30 136.0 134 60.4
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 5.7e-30 135.2 132 56.1
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 5.7e-30 135.2 147 55.8
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 5.7e-30 135.2 153 55.6
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 5.7e-30 135.2 130 60.0
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.7e-29 133.7 126 57.9
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.2e-29 133.3 138 55.1
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 2.2e-29 133.3 136 57.4
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 2.8e-29 132.9 132 59.1
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 2.4e-28 129.8 132 56.1
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 3.1e-28 129.4 157 54.1
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 3.1e-28 129.4 131 58.8
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 4.1e-28 129.0 157 51.6
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 4.1e-28 129.0 141 51.8
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 4.1e-28 129.0 128 57.0
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 9.1e-28 127.9 146 55.5
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 9.1e-28 127.9 137 56.2
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 9.1e-28 127.9 129 57.4
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.6e-27 127.1 132 56.8
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 2.0e-27 126.7 148 52.7
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 2.0e-27 126.7 124 56.5
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 2.0e-27 126.7 124 56.5
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 2.0e-27 126.7 124 56.5
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 3.5e-27 125.9 139 54.0
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.5e-27 125.6 148 53.4
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 5.9e-27 125.2 207 43.5
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 1.0e-26 124.4 209 43.1
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 1.7e-26 123.6 147 49.7
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 2.2e-26 123.2 139 54.0
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 2.9e-26 122.9 167 47.3
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 3.8e-26 122.5 124 58.1
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 3.8e-26 122.5 135 54.1
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 6.5e-26 121.7 135 54.1
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.9e-25 120.2 124 55.6
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 1.9e-25 120.2 119 57.1
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 2.5e-25 119.8 142 50.7
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 2.5e-25 119.8 131 53.4
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 3.2e-25 119.4 139 52.5
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 4.2e-25 119.0 133 55.6
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 5.5e-25 118.6 135 52.6
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 7.2e-25 118.2 140 50.7
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 1.2e-24 117.5 130 56.2
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 1.2e-24 117.5 162 52.5
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 1.2e-24 117.5 117 56.4
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.6e-24 117.1 112 57.1
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.6e-24 117.1 137 55.5
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.6e-24 117.1 139 51.8
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 2.1e-24 116.7 127 54.3
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 2.7e-24 116.3 124 55.6
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 2.7e-24 116.3 124 55.6
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 8.0e-24 114.8 124 52.4
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 1.4e-23 114.0 164 45.7
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 1.4e-23 114.0 164 45.7
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.4e-23 114.0 142 50.7
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 2.3e-23 113.2 131 51.1
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.3e-23 113.2 163 46.6
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 3.0e-23 112.8 130 53.8
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 5.2e-23 112.1 131 51.1
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 6.8e-23 111.7 128 52.3
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 6.8e-23 111.7 128 52.3
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 8.8e-23 111.3 139 51.1
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 1.2e-22 110.9 144 50.0
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 2.0e-22 110.2 141 50.4
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 3.4e-22 109.4 164 45.7
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 9.8e-22 107.8 147 48.3
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 1.3e-21 107.5 141 50.4
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 1.7e-21 107.1 142 50.0
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 2.2e-21 106.7 113 54.9
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 2.8e-21 106.3 141 51.8
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.8e-21 106.3 134 50.7
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 2.8e-21 106.3 141 49.6
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.8e-21 106.3 132 50.8
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 3.7e-21 105.9 128 50.8
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 8.3e-21 104.8 175 44.0
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.4e-20 104.0 127 50.4
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.8e-20 103.6 108 56.5
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 2.4e-20 103.2 108 53.7
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.4e-20 103.2 136 48.5
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 7.0e-20 101.7 91 60.4
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 2.0e-19 100.1 124 52.4
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 2.3e-18 96.7 83 61.4
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 1.1e-17 94.4 137 43.1
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 1.9e-17 93.6 135 47.4
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 2.5e-17 93.2 135 46.7
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 2.5e-17 93.2 135 46.7
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 7.2e-17 91.7 126 46.8
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 9.5e-17 91.3 74 63.5
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.8e-16 89.7 71 63.4
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 8.0e-16 88.2 134 43.3
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.4e-15 87.4 89 57.3
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 8.8e-15 84.7 120 46.7
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 1.2e-14 84.3 188 38.3
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 7.5e-14 81.6 126 45.2
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 2.2e-13 80.1 151 43.0
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.1e-12 77.8 63 61.9
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 2.0e-11 73.6 79 53.2
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 4.5e-11 72.4 58 65.5
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 4.5e-11 72.4 61 68.9
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 1.3e-10 70.9 58 65.5
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.1e-09 67.8 56 64.3
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 1.9e-09 67.0 151 36.4
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 9.5e-09 64.7 62 56.5
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.6e-08 63.9 47 70.2
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 4.7e-08 62.4 144 36.8
BcaC08g46579 Brassica carinata HOM05D004771 ORTHO05D005565 4.0e-07 59.3 85 42.4
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 5.2e-07 58.9 140 35.7
Cre03.g168500 Chlamydomonas reinhardtii HOM05D004771 ORTHO05D005565 3.4e-06 56.2 145 33.8


User provided reference genes

Program Settings