Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 0.0e+00 1152.5 575 100.0
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 1.9e-277 958.7 576 82.3
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 1.3e-276 956.1 566 83.4
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 3.7e-276 954.5 575 81.9
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 8.2e-276 953.4 576 82.1
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.4e-275 952.6 576 82.1
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 9.0e-275 949.9 575 81.6
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 7.7e-274 946.8 566 82.3
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 3.2e-272 941.4 583 79.1
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 7.2e-272 940.3 559 82.5
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 2.1e-271 938.7 581 79.3
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 3.6e-271 937.9 570 80.7
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 6.1e-271 937.2 570 80.7
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 2.3e-270 935.3 552 81.5
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 5.1e-270 934.1 576 80.0
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 1.1e-269 932.9 583 78.4
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 2.0e-269 932.2 553 83.0
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 2.5e-269 931.8 561 80.7
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 2.5e-269 931.8 552 81.3
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 4.3e-269 931.0 552 81.2
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 5.7e-269 930.6 565 80.7
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 5.7e-269 930.6 582 79.0
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 1.7e-268 929.1 562 80.8
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 1.1e-267 926.4 557 80.8
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 1.1e-267 926.4 581 78.7
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 3.1e-267 924.9 544 82.9
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 4.1e-267 924.5 544 82.9
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 5.3e-267 924.1 564 80.3
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 5.3e-267 924.1 576 79.2
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 1.5e-266 922.5 579 79.3
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 2.2e-265 918.7 549 81.1
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 6.5e-265 917.1 618 74.4
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 3.2e-264 914.8 563 79.4
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 2.1e-263 912.1 597 75.7
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 3.6e-263 911.4 579 76.3
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 4.7e-263 911.0 575 78.4
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 7.9e-263 910.2 589 76.1
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 1.4e-262 909.4 545 80.6
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 2.3e-262 908.7 565 78.6
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 5.1e-262 907.5 548 80.5
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 1.5e-261 906.0 563 78.2
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 2.0e-261 905.6 528 82.8
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 3.3e-261 904.8 587 76.3
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 7.4e-261 903.7 525 83.8
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 7.4e-261 903.7 597 74.9
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 9.7e-261 903.3 544 80.9
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 9.7e-261 903.3 544 80.0
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 9.7e-261 903.3 528 83.3
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 2.8e-260 901.7 528 83.0
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 2.8e-260 901.7 575 76.7
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 3.7e-260 901.4 588 76.0
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 6.3e-260 900.6 588 75.9
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 1.4e-259 899.4 525 82.3
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 2.4e-259 898.7 524 82.4
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 4.1e-259 897.9 546 79.7
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 4.1e-259 897.9 546 79.7
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 4.1e-259 897.9 575 76.2
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 9.1e-259 896.7 525 83.2
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 1.2e-258 896.3 577 77.6
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 2.0e-258 895.6 546 79.5
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 2.6e-258 895.2 577 75.4
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 3.5e-258 894.8 544 79.2
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 3.5e-258 894.8 544 79.2
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 3.5e-258 894.8 525 81.7
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 4.5e-258 894.4 544 79.0
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 7.7e-258 893.6 548 78.5
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 1.3e-257 892.9 564 77.7
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 2.2e-257 892.1 578 76.1
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 3.8e-257 891.3 577 75.0
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 5.0e-257 891.0 581 75.2
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 1.5e-256 889.4 511 84.9
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 3.2e-256 888.3 555 78.6
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 7.2e-256 887.1 578 75.8
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 2.7e-255 885.2 592 74.2
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 3.6e-255 884.8 586 72.7
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 3.6e-255 884.8 563 76.9
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 3.6e-255 884.8 589 74.4
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 3.6e-255 884.8 545 78.0
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 6.1e-255 884.0 543 78.6
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 1.4e-254 882.9 683 67.5
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 9.7e-253 876.7 546 77.5
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 2.8e-252 875.2 545 77.4
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 3.7e-252 874.8 545 77.8
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 1.2e-250 869.8 550 76.2
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 4.5e-250 867.8 544 77.2
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 3.8e-249 864.8 568 74.8
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 7.2e-248 860.5 524 79.4
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 2.7e-247 858.6 524 79.6
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 2.3e-246 855.5 524 78.8
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 8.8e-246 853.6 576 72.9
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 7.0e-243 844.0 544 75.9
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 2.5e-240 835.5 558 74.7
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 2.6e-237 825.5 548 72.6
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 7.5e-237 823.9 548 72.4
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.3e-236 823.2 524 77.9
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 2.2e-236 822.4 565 71.2
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 4.1e-235 818.1 574 71.4
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 4.2e-232 808.1 489 80.6
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 7.5e-229 797.3 563 69.1
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 7.5e-229 797.3 502 78.7
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 4.9e-228 794.7 471 79.8
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 2.4e-227 792.3 471 81.3
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 7.8e-226 787.3 472 79.7
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 4.9e-220 768.1 442 84.8
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 5.4e-219 764.6 469 78.3
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 2.5e-216 755.7 446 83.2
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 2.5e-216 755.7 543 69.1
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 2.9e-204 715.7 543 64.6
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 1.5e-197 693.3 570 59.1
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 4.9e-188 661.8 467 70.0
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 4.5e-173 612.1 553 56.1
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 4.9e-172 608.6 549 60.1
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 5.1e-169 598.6 530 56.4
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 1.8e-158 563.5 462 59.7
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 2.2e-151 540.0 522 53.4
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 8.0e-138 495.0 335 72.5
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 4.0e-129 466.1 279 82.1
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 6.4e-87 325.9 254 61.4
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 1.2e-77 295.0 158 86.7
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 2.9e-55 220.7 496 30.6
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 9.4e-38 162.5 211 46.9
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 1.3e-31 142.1 90 76.7
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 2.5e-30 137.9 438 26.0
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 8.5e-23 112.8 74 78.4
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 4.7e-21 107.1 66 72.7
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 8.8e-20 102.8 81 61.7
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 1.6e-08 65.5 362 25.4
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 5.5e-06 57.0 30 83.3


User provided reference genes

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