Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2929 Cannabis sativa HOM05D007314 ORTHO05D003768 2.2e-171 605.5 303 100.0
RcHm_v2.0_Chr3g0458231 Rosa chinensis HOM05D007314 ORTHO05D003768 1.7e-59 233.8 313 42.8
RcHm_v2.0_Chr3g0460621 Rosa chinensis HOM05D007314 ORTHO05D003768 1.6e-57 227.3 305 42.0
MELO3C031887.2 Cucumis melo HOM05D007314 ORTHO05D003768 5.1e-51 205.7 316 38.9
CsaV3_3G006830 Cucumis sativus L. HOM05D007314 ORTHO05D003768 8.7e-51 204.9 329 36.5
Sed0011740 Sechium edule HOM05D007314 ORTHO05D003768 1.6e-49 200.7 300 40.0
CANSAT35G0660 Cannabis sativa HOM05D007314 ORTHO05D003768 1.4e-48 197.6 228 48.7
ClCG05G014410 Citrullus lanatus HOM05D007314 ORTHO05D003768 1.9e-42 177.2 315 34.6
Sed0009392 Sechium edule HOM05D007314 ORTHO05D003768 2.7e-36 156.8 255 38.0
MELO3C008679.2 Cucumis melo HOM05D007314 ORTHO05D003768 7.9e-36 155.2 311 32.8
MELO3C035542.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.3e-35 154.5 304 34.9
CANSAT25G0318 Cannabis sativa HOM05D007314 ORTHO05D010380 3.7e-33 146.4 107 66.4
Rhsim03G0123400 Rhododendron simsii HOM05D007314 ORTHO05D010380 4.8e-33 146.0 232 41.4
MELO3C030512.2 Cucumis melo HOM05D007314 ORTHO05D003768 6.5e-30 135.6 390 28.5
MELO3C028846.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.8e-27 127.5 213 39.0
MELO3C027594.2 Cucumis melo HOM05D007314 ORTHO05D003768 4.3e-26 122.9 213 38.0
Sed0001060 Sechium edule HOM05D007314 ORTHO05D003768 4.3e-26 122.9 229 34.9
RcHm_v2.0_Chr5g0064801 Rosa chinensis HOM05D007314 ORTHO05D003768 1.4e-24 117.9 133 40.6
RcHm_v2.0_Chr6g0269851 Rosa chinensis HOM05D008321 ORTHO05D003768 3.1e-24 116.7 329 29.8
ClCG07G007700 Citrullus lanatus HOM05D007314 ORTHO05D003768 3.4e-23 113.2 192 34.4
MELO3C035305.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.0e-22 111.7 206 35.0
RcHm_v2.0_Chr4g0444771 Rosa chinensis HOM05D007314 ORTHO05D003768 9.4e-21 105.1 124 41.1
Rhsim01G0136300 Rhododendron simsii HOM05D004909 ORTHO05D009316 1.2e-20 104.8 217 34.6
Sed0001469 Sechium edule HOM05D007314 ORTHO05D003768 2.7e-20 103.6 118 48.3
Sed0011465 Sechium edule HOM05D007314 ORTHO05D003768 2.7e-20 103.6 118 48.3
MELO3C028271.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.4e-19 101.3 178 35.4
Rhsim04G0083300 Rhododendron simsii HOM05D007314 ORTHO05D010380 1.8e-19 100.9 187 39.6
PSO339G2614 Papaver somniferum HOM05D008526 ORTHO05D010380 5.1e-19 99.4 290 29.3
MELO3C030644.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.5e-18 97.8 175 34.9
MELO3C028434.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.9e-18 97.4 88 45.5
MELO3C029981.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.3e-17 94.7 114 38.6
MELO3C001336.2 Cucumis melo HOM05D007314 ORTHO05D003768 6.3e-17 92.4 71 52.1
CSS0049472 Camellia sinensis var. sinensis HOM05D008321 ORTHO05D003768 1.1e-16 91.7 271 30.3
MELO3C029040.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.1e-16 90.1 66 53.0
RcHm_v2.0_Chr7g0200591 Rosa chinensis HOM05D007314 ORTHO05D003768 3.1e-16 90.1 115 43.5
RcHm_v2.0_Chr3g0492801 Rosa chinensis HOM05D007314 ORTHO05D003768 2.0e-15 87.4 102 40.2
ClCG07G007690 Citrullus lanatus HOM05D000107 ORTHO05D000062 2.6e-15 87.0 79 53.2
RcHm_v2.0_Chr2g0134701 Rosa chinensis HOM05D009091 ORTHO05D003768 3.4e-15 86.7 367 24.8
FvH4_6g35541 Fragaria vesca HOM05D009091 ORTHO05D003768 4.5e-15 86.3 341 27.9
Rhsim01G0043800 Rhododendron simsii HOM05D007314 ORTHO05D003768 5.9e-15 85.9 210 31.9
MELO3C030144.2 Cucumis melo HOM05D007314 ORTHO05D003768 7.7e-15 85.5 71 45.1
MELO3C032996.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.9e-14 83.6 106 38.7
MELO3C029576.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.8e-14 83.2 180 33.3
RcHm_v2.0_Chr5g0059371 Rosa chinensis HOM05D007314 ORTHO05D003768 6.5e-14 82.4 70 51.4
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 1.1e-13 81.6 346 28.6
FvH4_4g16173 Fragaria vesca HOM05D008321 ORTHO05D003768 1.4e-13 81.3 348 25.9
MELO3C029734.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.5e-13 80.5 274 26.3
BolC4t24885H Brassica oleracea HOM05D031530 ORTHO05D023934 4.2e-13 79.7 114 37.7
MELO3C029411.2 Cucumis melo HOM05D007314 ORTHO05D003768 7.2e-13 79.0 126 35.7
MELO3C035437.2 Cucumis melo HOM05D007314 ORTHO05D003768 9.4e-13 78.6 121 36.4
MELO3C032718.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.2e-12 78.2 72 41.7
Rhsim06G0121300 Rhododendron simsii HOM05D007314 ORTHO05D010380 1.6e-12 77.8 80 56.2
CsaV3_4G009050 Cucumis sativus L. HOM05D007314 ORTHO05D003768 2.1e-12 77.4 71 46.5
RcHm_v2.0_Chr4g0433611 Rosa chinensis HOM05D009091 ORTHO05D003768 2.1e-12 77.4 182 30.8
Aqoxy1G02807 Aquilegia oxysepala HOM05D008321 ORTHO05D003768 2.7e-12 77.0 171 32.7
FAN08G3223 Fragaria x ananassa HOM05D009091 ORTHO05D003768 2.7e-12 77.0 161 34.2
MELO3C033672.2 Cucumis melo HOM05D007314 ORTHO05D003768 4.7e-12 76.3 164 32.3
PSO339G6242 Papaver somniferum HOM05D008526 ORTHO05D010380 7.9e-12 75.5 297 25.9
Rhsim05G0198600 Rhododendron simsii HOM05D000030 ORTHO05D003768 7.9e-12 75.5 181 32.6
ClCG11G015990 Citrullus lanatus HOM05D007314 ORTHO05D003768 1.0e-11 75.1 73 49.3
FvH4_5g18843 Fragaria vesca HOM05D008321 ORTHO05D003768 2.3e-11 73.9 306 25.5
FvH4_1g29233 Fragaria vesca HOM05D008321 ORTHO05D003768 8.8e-11 72.0 297 26.6
FvH4_4g06631 Fragaria vesca HOM05D008321 ORTHO05D003768 1.1e-10 71.6 216 27.3
FvH4_5g23172 Fragaria vesca HOM05D008321 ORTHO05D003768 1.5e-10 71.2 194 28.9
FvH4_4g01311 Fragaria vesca HOM05D007314 ORTHO05D003768 2.0e-10 70.9 97 39.2
CSS0033678 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 2.6e-10 70.5 194 28.9
CSS0040185 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 2.6e-10 70.5 191 29.8
CsaV3_7G021120 Cucumis sativus L. HOM05D007314 ORTHO05D003768 2.6e-10 70.5 58 53.4
CANSAT25G1818 Cannabis sativa HOM05D007314 ORTHO05D003768 3.3e-10 70.1 95 36.8
FvH4_4g12371 Fragaria vesca HOM05D007314 ORTHO05D003768 3.3e-10 70.1 291 25.8
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.3e-10 70.1 285 26.3
ClCG10G008410 Citrullus lanatus HOM05D007314 ORTHO05D003768 9.7e-10 68.6 203 31.0
FvH4_4g15323 Fragaria vesca HOM05D008321 ORTHO05D010380 9.7e-10 68.6 174 32.8
FAN08G2819 Fragaria x ananassa HOM05D008321 ORTHO05D003768 9.7e-10 68.6 134 35.8
Rhsim04G0152600 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.7e-09 67.8 80 51.2
CSS0010964 Camellia sinensis var. sinensis HOM05D008321 ORTHO05D003768 2.2e-09 67.4 161 33.5
Oeu016711.1 Olea europaea HOM05D023826 ORTHO05D003768 2.2e-09 67.4 151 34.4
MELO3C035072.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.7e-09 66.6 108 33.3
PSO832G4314 Papaver somniferum HOM05D008526 ORTHO05D010380 3.7e-09 66.6 104 37.5
Rhsim01G0098700 Rhododendron simsii HOM05D007314 ORTHO05D010380 3.7e-09 66.6 191 32.5
FvH4_5g37213 Fragaria vesca HOM05D008321 ORTHO05D010380 8.2e-09 65.5 175 32.6
FAN19G0969 Fragaria x ananassa HOM05D008321 ORTHO05D003768 8.2e-09 65.5 149 28.9
RcHm_v2.0_Chr3g0496631 Rosa chinensis HOM05D009091 ORTHO05D003768 8.2e-09 65.5 118 35.6
Atru.chr9.1118 Acer truncatum HOM05D007314 ORTHO05D003768 1.4e-08 64.7 115 34.8
CSS0038469 Camellia sinensis var. sinensis HOM05D008321 ORTHO05D003768 1.4e-08 64.7 262 27.5
Aqoxy4G01546 Aquilegia oxysepala HOM05D003464 ORTHO05D003170 1.8e-08 64.3 307 21.2
CSS0045228 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 1.8e-08 64.3 189 26.5
FvH4_6g20172 Fragaria vesca HOM05D008321 ORTHO05D003768 3.1e-08 63.5 72 40.3
FAN12G0755 Fragaria x ananassa HOM05D008321 ORTHO05D003768 3.1e-08 63.5 149 28.9
RcHm_v2.0_Chr0c28g0501051 Rosa chinensis HOM05D008321 ORTHO05D003768 3.1e-08 63.5 72 36.1
MBI06_g41780_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.1e-08 63.2 149 33.6
Nn2g11546 Nelumbo nucifera HOM05D001309 ORTHO05D000385 4.1e-08 63.2 196 27.0
Oeu029662.1 Olea europaea HOM05D009091 ORTHO05D003768 4.1e-08 63.2 139 32.4
C09p36000 Brassica napus HOM05D007314 ORTHO05D003768 7.0e-08 62.4 115 31.3
Hma1.2p1_0013F.1_g008410 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 7.0e-08 62.4 337 24.9
Hma1.2p1_2026F.1_g311550 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 7.0e-08 62.4 331 25.7
FvH4_6g21082 Fragaria vesca HOM05D007314 ORTHO05D003768 9.1e-08 62.0 57 45.6
FAN22G1616 Fragaria x ananassa HOM05D009091 ORTHO05D003768 1.2e-07 61.6 115 39.1
BolC2t08290H Brassica oleracea HOM05D007314 ORTHO05D003768 1.5e-07 61.2 65 43.1
FvH4_4g17212 Fragaria vesca HOM05D008321 ORTHO05D003768 1.5e-07 61.2 148 30.4
PSO339G2856 Papaver somniferum HOM05D008526 ORTHO05D010380 1.5e-07 61.2 206 29.6
RcHm_v2.0_Chr1g0329531 Rosa chinensis HOM05D000539 ORTHO05D000233 1.5e-07 61.2 163 34.4
MBI13_g31587_MAGBIO Magnolia biondii HOM05D009042 ORTHO05D003170 2.0e-07 60.8 304 22.4
Oeu047507.2 Olea europaea HOM05D007314 ORTHO05D003768 2.6e-07 60.5 141 28.4
CSS0045721 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 4.5e-07 59.7 86 34.9
MELO3C034792.2 Cucumis melo HOM05D007314 ORTHO05D003768 4.5e-07 59.7 44 50.0
RcHm_v2.0_Chr7g0177401 Rosa chinensis HOM05D007314 ORTHO05D003768 4.5e-07 59.7 45 60.0
PSO210G2358 Papaver somniferum HOM05D008526 ORTHO05D010380 5.9e-07 59.3 70 37.1
TPR.G25298 Trifolium pratense HOM05D000107 ORTHO05D000062 7.7e-07 58.9 176 31.2
RcHm_v2.0_Chr3g0492791 Rosa chinensis HOM05D007314 ORTHO05D003768 1.0e-06 58.5 48 60.4
Atru.chr2.2530 Acer truncatum HOM05D001899 ORTHO05D001858 1.3e-06 58.2 142 30.3
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 1.3e-06 58.2 206 31.6
RcHm_v2.0_Chr7g0231331 Rosa chinensis HOM05D009091 ORTHO05D003768 1.3e-06 58.2 117 29.1
Aqoxy1G03593 Aquilegia oxysepala HOM05D003464 ORTHO05D003170 1.7e-06 57.8 301 21.3
MELO3C000505.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.7e-06 57.8 41 53.7
RcHm_v2.0_Chr2g0108861 Rosa chinensis HOM05D000539 ORTHO05D000233 1.7e-06 57.8 203 31.0
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 1.7e-06 57.8 236 28.4
RcHm_v2.0_Chr3g0485221 Rosa chinensis HOM05D000539 ORTHO05D000233 1.7e-06 57.8 236 28.4
TAR365G0630 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.7e-06 57.8 129 31.8
Atru.chr7.467 Acer truncatum HOM05D000107 ORTHO05D000062 2.2e-06 57.4 177 27.1
CSS0011924 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 2.2e-06 57.4 104 31.7
FvH4_1g29373 Fragaria vesca HOM05D008321 ORTHO05D003768 2.2e-06 57.4 72 36.1
Rhsim06G0190000 Rhododendron simsii HOM05D001309 ORTHO05D000385 2.2e-06 57.4 163 30.7
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 2.2e-06 57.4 204 29.9
BolC2t10485H Brassica oleracea HOM05D007314 ORTHO05D003768 2.9e-06 57.0 72 43.1
FAN19G2766 Fragaria x ananassa HOM05D008321 ORTHO05D003768 2.9e-06 57.0 346 23.1
RcHm_v2.0_Chr5g0079551 Rosa chinensis HOM05D000539 ORTHO05D000233 2.9e-06 57.0 163 33.1
FAN07G1302 Fragaria x ananassa HOM05D008321 ORTHO05D003768 3.8e-06 56.6 80 36.2
RcHm_v2.0_Chr4g0401831 Rosa chinensis HOM05D000539 ORTHO05D000233 3.8e-06 56.6 159 30.2
MELO3C027838.2 Cucumis melo HOM05D007314 ORTHO05D003768 5.0e-06 56.2 54 48.1
FAN18G4094 Fragaria x ananassa HOM05D008321 ORTHO05D003768 5.0e-06 56.2 203 24.6
SHI39865 Sapria himalayana HOM05D000616 ORTHO05D000233 5.0e-06 56.2 158 32.9
Aqoxy2G01330 Aquilegia oxysepala HOM05D000167 ORTHO05D003170 6.5e-06 55.8 220 22.7
FvH4_3g21852 Fragaria vesca HOM05D008321 ORTHO05D003768 6.5e-06 55.8 70 37.1
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.5e-06 55.8 136 30.1
MELO3C032453.2 Cucumis melo HOM05D007314 ORTHO05D034924 8.5e-06 55.5 43 48.8
Hma1.2p1_1437F.1_g283240 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 8.5e-06 55.5 350 24.0


User provided reference genes

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