Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 2.2e-155 552.4 295 100.0
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 6.3e-155 550.8 295 99.7
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 1.4e-101 373.6 302 72.2
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 2.3e-101 372.9 299 70.2
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 8.9e-101 370.9 296 73.3
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.3e-99 367.1 307 69.7
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 2.2e-99 366.3 300 71.0
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 2.9e-99 365.9 299 70.6
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 3.7e-99 365.5 295 70.8
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 4.9e-99 365.2 302 71.9
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.4e-98 363.6 304 69.4
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 1.9e-98 363.2 297 71.4
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 3.2e-98 362.5 306 70.3
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 3.2e-98 362.5 299 68.2
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 4.1e-98 362.1 301 70.8
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 7.0e-98 361.3 299 70.9
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 9.2e-98 360.9 297 70.4
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.2e-97 360.5 302 71.2
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 3.5e-97 359.0 296 70.9
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 4.6e-97 358.6 309 68.3
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 4.6e-97 358.6 300 70.0
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 4.6e-97 358.6 303 70.3
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 7.8e-97 357.8 291 71.8
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.3e-96 357.1 295 69.2
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 1.3e-96 357.1 305 66.6
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 1.3e-96 357.1 299 69.6
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 1.7e-96 356.7 302 70.5
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 2.3e-96 356.3 304 71.1
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 2.3e-96 356.3 304 69.7
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 2.3e-96 356.3 299 69.6
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.0e-96 355.9 295 69.2
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 3.9e-96 355.5 297 71.0
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 5.1e-96 355.1 295 68.1
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 6.6e-96 354.8 306 70.3
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 8.6e-96 354.4 295 68.8
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 1.5e-95 353.6 298 71.5
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 2.5e-95 352.8 299 69.6
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 2.5e-95 352.8 300 68.0
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 4.3e-95 352.1 300 71.7
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 4.3e-95 352.1 300 71.0
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 5.6e-95 351.7 298 69.5
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 9.5e-95 350.9 302 68.9
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 1.2e-94 350.5 299 68.6
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 1.6e-94 350.1 296 67.9
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 2.8e-94 349.4 296 70.6
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 2.8e-94 349.4 295 67.5
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 3.6e-94 349.0 300 68.3
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 4.7e-94 348.6 299 68.9
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 6.2e-94 348.2 301 67.8
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 6.2e-94 348.2 297 69.0
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 8.1e-94 347.8 304 66.4
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 8.1e-94 347.8 212 86.3
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 1.8e-93 346.7 299 68.6
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 1.8e-93 346.7 301 67.8
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.3e-93 346.3 300 67.7
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 3.1e-93 345.9 296 68.9
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 4.0e-93 345.5 301 68.1
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 5.2e-93 345.1 300 67.7
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 6.8e-93 344.7 301 67.8
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 6.8e-93 344.7 298 68.5
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 8.9e-93 344.4 299 68.9
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.2e-92 344.0 296 69.3
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 1.5e-92 343.6 302 68.5
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 2.0e-92 343.2 298 68.1
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.6e-92 342.8 298 68.1
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 4.4e-92 342.0 299 67.2
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 4.4e-92 342.0 296 66.9
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 4.4e-92 342.0 295 68.5
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 5.8e-92 341.7 298 67.1
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 5.8e-92 341.7 298 67.4
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 7.5e-92 341.3 301 67.8
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 7.5e-92 341.3 302 68.2
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 9.9e-92 340.9 294 67.3
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 1.7e-91 340.1 296 67.6
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.7e-91 340.1 297 67.0
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 2.9e-91 339.3 297 68.4
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.9e-91 339.3 312 66.0
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 2.9e-91 339.3 203 87.2
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 2.9e-91 339.3 226 80.5
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 3.7e-91 339.0 297 66.0
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.7e-91 339.0 302 67.2
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 6.4e-91 338.2 292 69.5
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 8.3e-91 337.8 293 67.9
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 8.3e-91 337.8 295 66.8
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 1.4e-90 337.0 298 66.4
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 1.6e-89 333.6 245 74.7
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 2.7e-89 332.8 304 65.1
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.7e-89 332.8 303 64.7
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 3.5e-89 332.4 293 66.6
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 1.0e-88 330.9 298 67.8
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 3.9e-88 328.9 298 63.4
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 3.9e-88 328.9 298 66.1
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 4.7e-86 322.0 296 64.9
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 6.2e-86 321.6 302 64.6
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 6.2e-86 321.6 351 57.8
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 1.1e-85 320.9 296 66.9
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.4e-85 320.5 304 63.5
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.4e-85 320.5 304 63.5
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 1.8e-85 320.1 307 62.5
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 3.1e-85 319.3 299 63.9
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 4.0e-85 318.9 299 62.9
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 5.2e-85 318.5 297 63.0
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 6.8e-85 318.2 295 63.4
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 6.8e-85 318.2 283 66.8
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 6.8e-85 318.2 362 55.8
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 8.9e-85 317.8 308 62.3
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 8.9e-85 317.8 307 62.2
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 1.2e-84 317.4 299 64.5
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 2.6e-84 316.2 303 64.0
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 4.4e-84 315.5 301 62.5
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 5.8e-84 315.1 301 62.1
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 5.8e-84 315.1 297 63.6
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 5.8e-84 315.1 302 64.2
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 9.9e-84 314.3 306 61.1
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.3e-83 313.9 195 82.1
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 1.3e-83 313.9 195 83.1
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 1.3e-83 313.9 281 66.5
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 8.4e-83 311.2 264 69.3
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 9.2e-82 307.8 264 69.3
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 9.2e-82 307.8 248 71.0
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 1.2e-81 307.4 192 83.9
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 2.7e-81 306.2 289 64.7
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 3.0e-80 302.8 296 62.5
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 4.7e-78 295.4 213 71.4
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 2.4e-77 293.1 254 66.5
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 1.5e-76 290.4 277 61.4
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 2.0e-76 290.0 302 58.3
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 4.9e-75 285.4 199 76.4
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.6e-73 280.4 284 60.6
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 2.1e-73 280.0 336 54.5
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 3.5e-73 279.3 356 51.7
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 3.5e-73 279.3 196 72.4
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 3.5e-73 279.3 297 56.2
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.0e-72 277.7 195 74.4
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 3.0e-72 276.2 181 80.1
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.1e-71 274.2 287 58.2
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 5.6e-71 271.9 257 61.5
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 2.1e-70 270.0 212 70.8
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.1e-70 270.0 267 59.6
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 4.8e-70 268.9 257 60.7
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 5.3e-69 265.4 204 68.1
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 9.9e-68 261.2 226 69.0
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 1.7e-67 260.4 272 55.5
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 1.4e-61 240.7 242 57.9
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 1.0e-56 224.6 181 64.1
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 2.5e-55 219.9 203 60.1
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 7.1e-50 201.8 194 62.4
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 6.1e-49 198.7 183 60.1
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.5e-47 194.1 132 74.2
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 4.6e-41 172.6 107 86.9
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 8.5e-35 151.8 200 48.0
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 3.2e-34 149.8 211 43.1
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 7.2e-34 148.7 89 79.8
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 4.7e-33 146.0 107 69.2
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 4.2e-26 122.9 235 36.6
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 4.2e-26 122.9 207 39.6
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 4.7e-25 119.4 78 83.3
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.3e-22 111.3 141 52.5
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 2.2e-22 110.5 63 87.3
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 6.3e-22 109.0 63 85.7
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 4.1e-21 106.3 87 62.1
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 3.7e-14 83.2 173 34.7
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 3.5e-12 76.6 61 67.2
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 1.2e-07 61.6 45 64.4


User provided reference genes

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