Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 6.2e-129 464.2 236 100.0
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 6.8e-128 460.7 236 99.2
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.3e-105 386.7 228 83.3
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.8e-104 382.9 228 82.5
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.0e-103 379.4 228 82.5
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 5.8e-103 377.9 233 80.3
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.3e-102 376.7 229 80.8
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.9e-102 375.6 236 79.7
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 3.8e-102 375.2 226 82.7
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 8.4e-102 374.0 231 81.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.4e-101 373.2 236 78.8
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.9e-101 372.9 231 78.8
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 3.2e-101 372.1 229 81.2
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 3.2e-101 372.1 236 79.2
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 3.5e-100 368.6 229 80.3
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 3.5e-100 368.6 229 78.2
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 7.9e-100 367.5 236 77.5
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 1.0e-99 367.1 231 77.9
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.3e-99 366.7 229 78.2
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 1.3e-99 366.7 232 79.3
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.3e-99 366.7 236 78.8
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.3e-99 366.7 223 81.2
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 2.3e-99 365.9 229 79.9
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 8.7e-99 364.0 229 78.2
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 8.7e-99 364.0 231 78.8
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.5e-98 363.2 231 77.5
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 4.3e-98 361.7 228 77.6
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 5.6e-98 361.3 230 77.8
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 9.6e-98 360.5 232 75.4
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 1.6e-97 359.8 233 76.0
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.1e-97 359.4 236 77.1
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 2.1e-97 359.4 230 77.0
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 4.8e-97 358.2 228 76.3
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 4.8e-97 358.2 230 76.5
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 6.2e-97 357.8 229 77.3
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 6.2e-97 357.8 229 79.0
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.4e-96 356.7 236 75.0
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.4e-96 356.7 230 77.4
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 2.4e-96 355.9 229 76.9
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 2.4e-96 355.9 236 76.3
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 3.1e-96 355.5 229 78.2
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 4.0e-96 355.1 228 77.6
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 5.3e-96 354.8 232 75.0
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 5.3e-96 354.8 223 78.9
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 5.3e-96 354.8 228 76.3
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 6.9e-96 354.4 226 77.4
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 6.9e-96 354.4 226 76.5
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 9.0e-96 354.0 234 73.5
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 9.0e-96 354.0 226 76.1
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.5e-95 353.2 235 73.6
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.5e-95 353.2 229 77.3
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 2.0e-95 352.8 226 76.1
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.6e-95 352.4 226 77.0
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 4.5e-95 351.7 229 75.1
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 5.8e-95 351.3 226 76.1
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 7.6e-95 350.9 228 76.8
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 7.6e-95 350.9 232 74.1
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.0e-94 350.5 228 77.2
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.7e-94 349.7 231 76.2
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.7e-94 349.7 229 75.5
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 1.7e-94 349.7 233 73.8
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 2.9e-94 349.0 259 70.3
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 3.8e-94 348.6 230 72.6
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 3.8e-94 348.6 223 79.4
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 4.9e-94 348.2 217 78.8
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 6.5e-94 347.8 233 73.4
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 6.5e-94 347.8 230 73.5
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 6.5e-94 347.8 229 75.1
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 1.1e-93 347.1 228 74.1
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.1e-93 347.1 230 71.3
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 1.4e-93 346.7 231 73.2
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 1.9e-93 346.3 230 75.2
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.9e-93 346.3 228 74.1
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.9e-93 346.3 215 80.5
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 3.2e-93 345.5 229 76.0
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 4.2e-93 345.1 228 75.0
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 5.5e-93 344.7 228 73.7
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 5.5e-93 344.7 234 75.2
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 7.1e-93 344.4 234 74.8
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 9.3e-93 344.0 228 74.1
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.1e-92 342.8 229 76.9
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 2.1e-92 342.8 228 72.8
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 2.1e-92 342.8 230 71.7
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 2.1e-92 342.8 233 72.5
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 2.7e-92 342.4 229 73.8
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 3.5e-92 342.0 222 76.1
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 3.5e-92 342.0 232 73.3
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 4.6e-92 341.7 229 72.1
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 6.0e-92 341.3 228 72.4
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 7.9e-92 340.9 228 72.8
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 7.9e-92 340.9 230 70.4
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 7.9e-92 340.9 234 70.5
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 7.9e-92 340.9 222 75.7
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 7.9e-92 340.9 224 75.0
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.0e-91 340.5 228 72.4
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.0e-91 340.5 227 73.6
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 1.3e-91 340.1 228 71.9
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 1.3e-91 340.1 228 72.8
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 1.8e-91 339.7 225 73.8
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.8e-91 339.7 202 83.2
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 3.0e-91 339.0 228 72.4
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 3.9e-91 338.6 229 72.9
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 6.7e-91 337.8 231 72.7
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 8.7e-91 337.4 223 74.9
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 8.7e-91 337.4 227 74.0
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 8.7e-91 337.4 228 71.5
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.5e-90 335.9 223 75.3
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 5.7e-90 334.7 223 74.9
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 9.6e-90 334.0 223 74.4
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.1e-89 332.8 228 71.9
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.5e-87 326.6 228 71.9
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.6e-87 325.9 313 56.2
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 8.4e-86 320.9 229 69.0
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.4e-85 320.1 226 69.9
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.2e-85 318.9 236 70.3
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 1.0e-83 313.9 239 68.6
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 2.3e-83 312.8 204 75.0
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 2.3e-83 312.8 211 73.0
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 7.4e-82 307.8 228 68.0
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 9.7e-82 307.4 233 69.5
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 2.2e-81 306.2 193 77.7
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 6.3e-81 304.7 229 65.1
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 2.4e-80 302.8 214 72.4
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 1.3e-78 297.0 221 66.5
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.4e-77 293.5 215 69.3
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 9.4e-77 290.8 191 75.4
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.6e-76 290.0 214 66.8
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.5e-71 273.5 238 61.8
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 5.0e-70 268.5 181 76.2
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 1.8e-67 260.0 147 85.7
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 4.1e-64 248.8 182 69.8
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 4.2e-61 238.8 133 87.2
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.5e-61 238.4 144 81.2
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 5.5e-61 238.4 226 52.7
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 7.2e-61 238.0 215 58.6
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 3.6e-60 235.7 221 52.0
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 6.1e-60 235.0 235 51.5
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 1.4e-59 233.8 220 53.6
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.3e-56 221.9 124 87.9
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 5.7e-50 201.8 138 72.5
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 5.7e-50 201.8 141 68.1
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 5.7e-50 201.8 144 70.8
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 7.0e-48 194.9 143 70.6
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 5.9e-47 191.8 119 76.5
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 5.0e-46 188.7 134 69.4
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 6.5e-46 188.3 135 68.1
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 3.2e-45 186.0 144 62.5
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 7.5e-42 174.9 146 62.3
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.7e-41 173.7 191 46.6
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 5.9e-39 165.2 151 60.3
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-38 164.1 126 67.5
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 5.2e-35 152.1 194 43.8
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.2e-34 151.0 88 81.8
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.7e-33 147.1 85 82.4
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 2.2e-33 146.7 109 68.8
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 2.9e-33 146.4 191 45.5
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 5.4e-32 142.1 97 74.2
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.2e-31 141.0 102 70.6
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 1.3e-30 137.5 104 67.3
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 2.5e-29 133.3 91 72.5
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 7.3e-29 131.7 96 68.8
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 1.2e-28 131.0 82 79.3
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 8.0e-28 128.3 85 75.3
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 3.1e-27 126.3 79 79.7
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 6.8e-27 125.2 95 68.4
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.0e-26 123.6 85 69.4
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 2.9e-25 119.8 93 68.8
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 6.4e-25 118.6 69 82.6
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-24 117.1 145 48.3
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.4e-24 115.5 85 70.6
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 2.0e-23 113.6 76 73.7
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 6.0e-23 112.1 85 65.9
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.2e-20 104.4 125 53.6
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 8.9e-19 98.2 92 58.7
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 9.8e-18 94.7 61 73.8
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 4.9e-17 92.4 223 29.6
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 2.4e-16 90.1 51 86.3
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 4.1e-16 89.4 220 30.9
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 5.4e-16 89.0 63 71.4
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-13 80.5 60 68.3
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 2.0e-10 70.5 49 67.3
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 3.4e-10 69.7 187 27.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 4.9e-09 65.9 66 51.5


User provided reference genes

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