Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.7e-93 346.7 272 100.0
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 1.8e-76 290.0 266 90.2
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 1.7e-74 283.5 266 88.3
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 1.9e-73 280.0 266 88.3
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 3.6e-72 275.8 266 88.0
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 1.0e-71 274.2 252 90.9
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 5.2e-71 271.9 254 90.6
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 6.8e-71 271.6 266 88.0
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 6.8e-71 271.6 266 88.0
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 1.5e-70 270.4 266 86.5
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.0e-70 270.0 266 87.2
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 5.7e-70 268.5 267 85.4
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.7e-69 266.9 272 84.6
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.2e-69 266.5 266 85.7
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 4.9e-69 265.4 268 84.0
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 4.9e-69 265.4 271 84.9
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 4.9e-69 265.4 267 85.4
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 1.1e-68 264.2 271 84.1
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.1e-68 264.2 266 84.6
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.8e-68 263.5 266 77.1
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 2.4e-68 263.1 267 82.4
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 4.1e-68 262.3 271 83.4
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 5.4e-68 261.9 271 83.8
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 7.0e-68 261.5 266 84.2
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.0e-68 261.5 266 84.6
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 7.0e-68 261.5 266 84.6
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.0e-66 257.7 264 84.1
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 1.3e-66 257.3 267 83.9
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.3e-66 257.3 271 82.3
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.3e-66 256.5 266 84.2
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 6.6e-66 255.0 266 82.7
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 8.6e-66 254.6 268 84.0
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 8.6e-66 254.6 268 84.0
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.9e-65 253.4 271 80.8
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 3.3e-65 252.7 271 80.8
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 7.3e-65 251.5 252 86.5
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 9.5e-65 251.1 271 80.4
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 9.5e-65 251.1 248 87.1
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.2e-64 250.8 267 82.8
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.1e-64 250.0 266 83.1
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.1e-64 250.0 266 83.1
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 2.8e-64 249.6 266 81.2
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.0e-63 247.7 262 82.8
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 1.8e-63 246.9 250 84.4
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 1.8e-63 246.9 250 81.6
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 2.3e-63 246.5 271 79.7
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 2.3e-63 246.5 267 80.1
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 8.9e-63 244.6 272 81.2
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 8.9e-63 244.6 268 81.0
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 8.9e-63 244.6 268 81.0
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 1.2e-62 244.2 261 82.4
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 1.2e-62 244.2 267 81.6
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.5e-62 243.8 266 80.8
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 1.5e-62 243.8 267 80.9
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 2.0e-62 243.4 273 79.9
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.4e-62 242.3 266 80.5
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 1.7e-61 240.4 266 78.6
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 2.2e-61 240.0 256 83.2
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 4.9e-61 238.8 268 79.5
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 6.4e-61 238.4 250 84.8
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 6.4e-61 238.4 267 81.6
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 6.4e-61 238.4 252 82.5
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.1e-60 237.7 267 80.5
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 1.8e-60 236.9 266 75.6
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 5.4e-60 235.3 257 82.1
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 5.4e-60 235.3 269 80.7
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 9.2e-60 234.6 250 84.4
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 2.7e-59 233.0 263 79.1
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 5.9e-59 231.9 256 81.6
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.9e-59 231.9 268 78.4
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 5.9e-59 231.9 270 77.8
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 2.3e-58 229.9 256 80.9
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 3.0e-58 229.6 251 80.1
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 5.0e-58 228.8 263 79.8
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 5.0e-58 228.8 268 77.2
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 6.6e-58 228.4 268 77.6
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 6.6e-58 228.4 256 81.2
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 6.6e-58 228.4 266 77.8
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 6.6e-58 228.4 266 77.8
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 6.6e-58 228.4 271 76.4
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 8.6e-58 228.0 267 78.3
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 8.6e-58 228.0 267 76.8
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 8.6e-58 228.0 267 76.8
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 8.6e-58 228.0 268 78.0
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 1.9e-57 226.9 261 78.5
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.9e-57 226.9 267 78.3
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 2.5e-57 226.5 255 80.8
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 3.3e-57 226.1 270 78.9
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 3.3e-57 226.1 255 80.8
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 3.3e-57 226.1 267 79.0
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 9.5e-57 224.6 243 83.5
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 1.2e-56 224.2 268 78.7
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.2e-56 224.2 246 83.7
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 2.8e-56 223.0 273 77.7
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 3.6e-56 222.6 269 77.3
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 3.6e-56 222.6 268 78.4
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 3.6e-56 222.6 268 78.4
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 3.6e-56 222.6 268 78.4
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 3.6e-56 222.6 268 78.4
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 6.2e-56 221.9 267 78.7
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.0e-55 221.1 266 75.6
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.8e-55 220.3 265 76.6
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 2.3e-55 219.9 266 77.1
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.1e-55 219.5 274 52.6
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 6.8e-55 218.4 272 73.9
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 8.9e-55 218.0 250 78.8
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 1.5e-54 217.2 266 76.7
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 2.0e-54 216.9 265 76.2
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.0e-54 216.9 230 88.3
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.6e-54 216.5 256 78.5
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 3.4e-54 216.1 266 76.3
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 4.4e-54 215.7 266 76.3
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 4.4e-54 215.7 266 76.3
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 9.8e-54 214.5 266 75.6
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.3e-53 214.2 257 79.0
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.3e-53 214.2 260 78.8
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 6.4e-53 211.8 268 76.1
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 2.4e-52 209.9 272 74.6
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 4.1e-52 209.1 233 85.0
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 4.1e-52 209.1 281 73.0
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 7.0e-52 208.4 271 72.0
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 7.0e-52 208.4 260 77.3
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 9.2e-52 208.0 266 75.6
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 2.7e-51 206.5 269 73.2
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.0e-50 204.5 253 77.9
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.3e-50 204.1 268 75.0
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.7e-50 203.8 276 44.6
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.9e-49 200.3 228 86.8
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 2.5e-49 199.9 236 82.2
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 4.7e-48 195.7 229 83.8
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 4.7e-48 195.7 273 69.6
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 8.1e-48 194.9 268 71.3
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 8.1e-48 194.9 273 67.0
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 1.5e-46 190.7 259 72.6
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 7.5e-46 188.3 255 74.1
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 1.7e-45 187.2 260 72.3
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 2.2e-45 186.8 229 81.7
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 3.2e-44 183.0 265 70.9
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 6.6e-42 175.3 266 58.3
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.1e-41 174.5 265 69.1
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 4.0e-39 166.0 219 80.8
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 2.9e-37 159.8 87 87.4
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-36 157.1 237 74.3
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 4.1e-36 156.0 214 81.3
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 7.1e-36 155.2 101 77.2
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.8e-31 140.6 208 79.8
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.8e-29 132.9 97 66.0
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 4.9e-29 132.5 86 73.3
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.4e-28 131.0 275 62.5
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 4.2e-28 129.4 267 64.4
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 1.2e-27 127.9 246 57.7
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 2.0e-22 110.5 84 63.1
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 9.9e-22 108.2 83 68.7
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.3e-21 107.8 82 63.4
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.9e-20 104.0 78 66.7
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.3e-13 81.3 57 71.9
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 2.1e-08 63.9 243 57.2
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 8.1e-08 62.0 53 54.7
AagrBONN_evm.TU.Sc2ySwM_344.3554 Anthoceros agrestis HOM05D000094 ORTHO05D001056 6.9e-07 58.9 102 38.2
AUR62008062 Chenopodium quinoa HOM05D000094 ORTHO05D001056 1.5e-06 57.8 89 39.3
Medtr4g092530 Medicago truncatula HOM05D000094 ORTHO05D001056 4.5e-06 56.2 87 36.8
RcHm_v2.0_Chr2g0084611 Rosa chinensis HOM05D000094 ORTHO05D001056 4.5e-06 56.2 83 34.9
TPR.G15150 Trifolium pratense HOM05D000094 ORTHO05D001056 7.6e-06 55.5 102 33.3
ECA232G4752 Erigeron canadensis HOM05D000094 ORTHO05D001056 1.0e-05 55.1 99 37.4
THA.LOC104803094 Tarenaya hassleriana HOM05D000094 ORTHO05D001056 1.0e-05 55.1 106 34.0


User provided reference genes

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