Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 0.0e+00 1513.4 1100 100.0
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 2.9e-213 746.5 1120 63.3
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 1.0e-205 721.5 1116 62.2
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 2.8e-200 703.4 1169 59.0
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 4.8e-200 702.6 1141 54.1
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 6.9e-199 698.7 1138 56.7
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 1.4e-186 657.9 1064 60.7
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 3.8e-181 639.8 1112 57.0
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 1.6e-179 634.4 1119 58.4
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.6e-179 634.4 1119 59.4
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 1.0e-178 631.7 1114 59.2
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 6.8e-178 629.0 1123 59.1
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 2.6e-177 627.1 1072 60.3
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.2e-174 618.2 1117 63.4
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 8.5e-173 612.1 1119 62.0
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 1.5e-172 611.3 1112 58.5
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 8.0e-171 605.5 1119 61.8
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 9.8e-169 598.6 1119 55.6
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 1.7e-168 597.8 1121 58.3
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 4.9e-168 596.3 1119 60.7
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 4.1e-167 593.2 1125 57.8
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 1.6e-166 591.3 1122 52.2
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 2.7e-166 590.5 1131 61.1
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 1.3e-165 588.2 1099 61.4
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 1.1e-164 585.1 1054 61.0
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 1.9e-164 584.3 1129 51.9
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 4.3e-164 583.2 1099 61.3
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 1.4e-162 578.2 1123 56.3
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 1.8e-162 577.8 1106 55.3
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 3.4e-161 573.5 1118 53.0
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 4.4e-161 573.2 1118 56.9
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 2.9e-160 570.5 1099 60.8
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 4.9e-160 569.7 1116 59.9
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 2.4e-159 567.4 1161 46.0
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 4.1e-159 566.6 1124 58.5
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 3.9e-157 560.1 1129 55.6
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.9e-156 557.8 1025 63.0
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 5.6e-156 556.2 1108 60.0
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 2.3e-154 550.8 1129 55.4
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 1.2e-153 548.5 1119 59.2
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 3.4e-153 547.0 1194 48.8
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 5.8e-153 546.2 1119 56.5
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 1.3e-152 545.0 1120 50.8
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 6.4e-152 542.7 1114 59.0
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 8.3e-152 542.3 1147 58.8
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 1.4e-151 541.6 1163 58.3
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 5.4e-151 539.7 1146 59.0
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 9.2e-151 538.9 1122 58.7
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 1.6e-150 538.1 1132 49.3
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 2.7e-150 537.3 1142 54.8
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 7.3e-148 529.3 1201 47.6
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 1.6e-147 528.1 1118 58.0
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 7.1e-143 512.7 1119 53.3
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 9.2e-143 512.3 1171 52.5
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 1.0e-141 508.8 1109 51.0
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 3.9e-141 506.9 1172 52.2
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 9.9e-137 492.3 1116 57.0
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 5.4e-135 486.5 711 78.3
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 1.2e-134 485.3 1086 58.2
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 2.1e-134 484.6 1095 57.8
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 6.0e-134 483.0 1121 54.4
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 1.2e-131 475.3 1122 53.0
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 1.8e-130 471.5 1162 55.2
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 3.1e-130 470.7 882 66.4
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 4.0e-130 470.3 1123 49.6
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 6.9e-130 469.5 1047 49.0
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 2.6e-129 467.6 1187 55.0
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 5.8e-129 466.5 1120 52.5
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 5.8e-129 466.5 1114 53.1
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 7.6e-129 466.1 1188 54.4
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 2.2e-128 464.5 1104 57.2
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 6.4e-128 463.0 1150 52.7
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 1.1e-127 462.2 1127 52.5
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 2.4e-127 461.1 1135 51.7
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 9.3e-127 459.1 1132 53.4
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 1.6e-126 458.4 1174 53.7
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 2.7e-126 457.6 1116 54.2
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 3.0e-125 454.1 1127 55.3
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 5.1e-125 453.4 1182 53.4
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 1.1e-124 452.2 1097 52.9
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 2.5e-124 451.1 1161 54.4
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 1.6e-123 448.4 829 68.9
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 3.1e-122 444.1 1117 49.6
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 1.3e-120 438.7 922 55.9
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.9e-120 437.6 749 71.7
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 2.4e-119 434.5 1142 51.5
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 1.3e-115 422.2 983 49.6
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 1.6e-115 421.8 962 45.7
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 3.7e-115 420.6 916 61.8
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 6.7e-109 399.8 710 64.5
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 1.1e-106 392.5 500 69.8
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 1.0e-104 386.0 1111 45.4
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 2.1e-102 378.3 1019 58.6
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 3.0e-101 374.4 689 55.3
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 3.8e-96 357.5 932 50.2
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 5.3e-90 337.0 764 56.4
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 3.3e-76 291.2 263 54.4
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.6e-57 229.2 165 66.1
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.1e-55 223.0 695 51.7
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.8e-53 215.7 245 47.8
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 1.1e-50 206.5 676 45.4
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 5.6e-47 194.1 733 42.7
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 5.8e-44 184.1 690 61.7
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.7e-43 181.4 123 74.8
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 7.8e-41 173.7 705 50.6
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 3.0e-40 171.8 238 40.3
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 3.3e-39 168.3 278 36.0
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 8.9e-37 160.2 705 60.1
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.6e-36 158.7 129 65.1
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 4.9e-35 154.5 243 39.9
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.5e-31 142.1 108 65.7
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 1.6e-30 139.4 221 87.3
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 6.2e-30 137.5 740 40.0
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 8.1e-30 137.1 120 60.8
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 8.9e-29 133.7 138 47.8
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 7.5e-28 130.6 265 65.3
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 2.4e-26 125.6 289 30.1
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 7.1e-26 124.0 242 76.0
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 8.6e-24 117.1 122 53.3
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 2.8e-22 112.1 235 28.5
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 5.8e-20 104.4 92 54.3
QL11p047023 Quercus lobata HOM05D005996 ORTHO05D007507 4.6e-17 94.7 133 46.6
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 3.4e-12 78.6 215 29.3
Ciclev10028828m.g Citrus clementina HOM05D005996 ORTHO05D007507 1.3e-08 66.6 362 28.7
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.1e-07 63.5 64 84.4
SEGI_16644 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 9.6e-07 60.5 38 71.1
SEGI_00210 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 4.8e-06 58.2 55 56.4


User provided reference genes

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