Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 0.0e+00 3942.5 2520 100.0
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 7.8e-28 131.7 298 41.9
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 6.6e-27 128.6 297 36.4
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 1.2e-23 117.9 291 36.4
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 2.9e-22 113.2 296 36.1
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 9.2e-21 108.2 292 34.2
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 2.0e-20 107.1 302 35.4
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 1.0e-19 104.8 287 34.1
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 1.7e-19 104.0 288 34.7
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 3.9e-19 102.8 230 37.0
Sabra02G0052900 Salix brachista HOM05D015223 ORTHO05D037420 1.1e-18 101.3 251 36.7
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 3.3e-18 99.8 278 34.2
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 9.5e-18 98.2 298 33.9
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 3.6e-17 96.3 234 30.8
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 4.7e-17 95.9 161 41.0
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 4.7e-17 95.9 261 36.4
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 3.1e-16 93.2 300 33.0
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 4.4e-15 89.4 243 34.2
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 5.8e-15 89.0 274 33.9
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 7.5e-15 88.6 87 56.3
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 1.3e-14 87.8 87 56.3
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.3e-14 87.8 154 40.9
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 1.7e-14 87.4 243 33.7
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 6.4e-14 85.5 279 29.7
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 1.1e-13 84.7 321 28.3
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 1.9e-13 84.0 254 31.1
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 9.2e-13 81.6 252 32.1
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 9.2e-13 81.6 208 34.6
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 1.2e-12 81.3 275 30.5
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 1.2e-12 81.3 223 33.2
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 3.5e-12 79.7 78 53.8
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 4.6e-12 79.3 194 36.1
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 4.6e-12 79.3 82 51.2
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 7.8e-12 78.6 273 30.0
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 1.7e-11 77.4 284 30.3
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 2.3e-11 77.0 78 52.6
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 5.1e-11 75.9 214 32.2
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 1.5e-10 74.3 204 33.3
PGSC0003DMG400006365 Solanum tuberosum HOM05D011323 ORTHO05D010674 1.9e-10 73.9 318 28.0
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 2.5e-10 73.6 166 33.1
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 2.5e-10 73.6 270 31.5
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 2.5e-10 73.6 289 30.1
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 5.6e-10 72.4 268 32.1
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 9.5e-10 71.6 168 35.7
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 9.5e-10 71.6 275 29.8
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 9.5e-10 71.6 218 30.7
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 1.2e-09 71.2 183 38.3
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 1.2e-09 71.2 281 29.2
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 2.1e-09 70.5 265 27.5
FvH4_2g13350 Fragaria vesca HOM05D012764 ORTHO05D010674 3.6e-09 69.7 209 31.1
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 8.1e-09 68.6 80 51.2
FAN24G0895 Fragaria x ananassa HOM05D012764 ORTHO05D010674 8.1e-09 68.6 209 31.1
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 1.1e-08 68.2 82 50.0
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 1.8e-08 67.4 78 47.4
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 3.1e-08 66.6 277 27.1
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 3.1e-08 66.6 90 43.3
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 5.2e-08 65.9 177 33.3
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 8.9e-08 65.1 79 48.1
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 8.9e-08 65.1 47 66.0
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 1.2e-07 64.7 41 73.2
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 1.2e-07 64.7 50 64.0
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 1.2e-07 64.7 47 61.7
BolC6t40120H Brassica oleracea HOM05D010491 ORTHO05D012559 2.0e-07 63.9 80 47.5
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 3.4e-07 63.2 217 30.0
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 3.4e-07 63.2 217 30.0
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 3.4e-07 63.2 217 30.0
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 3.4e-07 63.2 41 70.7
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 4.4e-07 62.8 267 28.8
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 5.8e-07 62.4 170 31.8
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 9.9e-07 61.6 41 70.7
Psat1g100480 Pisum sativum HOM05D014873 ORTHO05D015681 2.9e-06 60.1 50 58.0
Lsat_1_v5_gn_1_4921 Lactuca sativa HOM05D011323 ORTHO05D010674 3.7e-06 59.7 223 29.6
Aqoxy6G00395 Aquilegia oxysepala HOM05D011323 ORTHO05D010674 4.9e-06 59.3 242 28.5
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 4.9e-06 59.3 39 66.7
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 4.9e-06 59.3 251 27.5
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 8.3e-06 58.5 42 61.9
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 8.3e-06 58.5 36 72.2
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 8.3e-06 58.5 36 72.2


User provided reference genes

Program Settings