Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 5.3e-105 384.4 200 100.0
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 2.9e-95 352.1 193 95.3
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.7e-74 283.1 195 79.5
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 2.8e-74 282.3 195 79.0
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.4e-73 280.0 195 78.5
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.4e-73 279.3 197 78.2
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 1.2e-72 276.9 191 78.5
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.2e-72 276.9 195 77.9
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 2.0e-72 276.2 191 78.5
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 2.0e-72 276.2 195 77.9
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.0e-71 273.9 182 80.2
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.3e-71 273.5 191 77.5
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 2.7e-69 265.8 196 75.5
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 2.7e-69 265.8 190 77.4
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 3.6e-69 265.4 194 72.2
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 3.0e-68 262.3 222 68.5
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 5.2e-68 261.5 193 73.6
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.1e-67 260.4 194 74.7
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 2.0e-67 259.6 138 94.9
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 7.4e-67 257.7 192 75.0
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 9.7e-67 257.3 199 74.9
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.7e-66 256.5 194 74.7
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 2.2e-66 256.1 195 73.8
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 3.7e-66 255.4 192 74.5
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 8.2e-66 254.2 189 70.9
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 1.1e-65 253.8 136 94.9
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.8e-65 253.1 192 74.0
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 4.1e-65 251.9 194 72.2
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 4.1e-65 251.9 191 73.8
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 7.0e-65 251.1 194 71.6
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 7.0e-65 251.1 243 62.1
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 9.1e-65 250.8 185 71.9
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 2.0e-64 249.6 192 72.4
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 2.0e-64 249.6 187 72.2
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 3.5e-64 248.8 187 71.7
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 5.9e-64 248.1 184 72.8
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 7.7e-64 247.7 194 70.6
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 7.7e-64 247.7 194 69.6
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.7e-63 246.5 194 69.6
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 2.9e-63 245.7 195 68.7
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.1e-62 243.8 184 73.9
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.5e-62 243.4 190 68.9
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 2.5e-62 242.7 199 69.3
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 3.2e-62 242.3 188 70.7
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 4.2e-62 241.9 192 67.2
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 4.2e-62 241.9 194 69.1
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 5.5e-62 241.5 184 72.8
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 5.5e-62 241.5 187 69.5
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 7.2e-62 241.1 184 72.8
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 9.4e-62 240.7 190 70.5
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.2e-61 240.4 181 71.8
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 2.7e-61 239.2 193 71.0
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 6.1e-61 238.0 194 68.0
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 8.0e-61 237.7 194 68.0
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 8.0e-61 237.7 184 71.2
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 2.3e-60 236.1 196 68.4
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 2.3e-60 236.1 193 68.9
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 3.0e-60 235.7 192 70.8
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 4.0e-60 235.3 192 71.4
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 2.6e-59 232.6 199 66.3
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.3e-58 230.3 217 62.2
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 4.8e-58 228.4 194 66.5
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 6.3e-58 228.0 195 69.2
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 1.8e-57 226.5 191 67.5
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 3.1e-57 225.7 224 58.9
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.2e-56 223.8 182 68.1
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.0e-56 223.0 194 66.0
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.7e-56 222.6 182 67.6
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 2.7e-56 222.6 194 64.9
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 5.9e-56 221.5 189 65.1
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 7.7e-56 221.1 195 66.2
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.0e-55 220.7 195 62.1
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.7e-55 219.9 164 71.3
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 2.2e-55 219.5 203 64.0
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 6.5e-55 218.0 191 66.0
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.9e-54 216.5 195 61.5
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 2.5e-54 216.1 190 64.7
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 5.5e-54 214.9 186 63.4
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.2e-53 213.8 188 62.8
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 2.1e-53 213.0 188 66.0
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 6.1e-53 211.5 194 62.9
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.0e-52 210.7 188 64.9
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 5.2e-52 208.4 140 77.9
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 8.8e-52 207.6 181 63.0
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.2e-51 207.2 193 60.1
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.5e-51 206.8 133 77.4
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.5e-51 206.8 167 65.3
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 9.8e-51 204.1 167 64.7
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.2e-50 203.0 182 66.5
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.7e-50 202.2 195 63.6
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 1.1e-49 200.7 174 66.1
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 3.1e-49 199.1 191 62.3
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 3.1e-49 199.1 174 65.5
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 3.1e-49 199.1 193 54.4
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 5.4e-49 198.4 187 62.0
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 5.4e-49 198.4 195 60.0
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.2e-48 197.2 190 62.1
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 5.9e-48 194.9 140 71.4
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 7.7e-48 194.5 191 60.7
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 1.0e-47 194.1 194 60.3
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-47 193.7 157 66.9
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 1.3e-47 193.7 157 66.9
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 5.0e-47 191.8 218 55.5
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.6e-45 186.8 169 62.7
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 5.2e-44 181.8 187 58.8
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 5.2e-44 181.8 185 58.9
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 4.4e-43 178.7 226 49.1
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.3e-42 177.2 181 58.0
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 3.7e-42 175.6 189 55.0
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 8.3e-42 174.5 198 55.1
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 9.2e-41 171.0 153 62.7
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 8.6e-39 164.5 170 55.9
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 7.3e-38 161.4 178 57.3
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 1.2e-37 160.6 156 59.6
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.6e-37 160.2 187 53.5
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 2.1e-37 159.8 139 68.3
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 6.1e-37 158.3 181 54.1
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.8e-36 156.8 152 59.9
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 7.5e-35 151.4 112 69.6
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 2.2e-34 149.8 159 57.2
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 7.5e-27 124.8 113 62.8
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 8.6e-23 111.3 79 73.4
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.5e-22 109.8 81 67.9
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 1.1e-20 104.4 178 41.0
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 6.8e-20 101.7 65 76.9
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.2e-19 100.9 197 37.1
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.7e-18 95.9 145 40.0
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 4.1e-17 92.4 65 70.8
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 6.6e-15 85.1 153 37.9
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 7.3e-14 81.6 85 54.1
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 9.5e-14 81.3 177 39.0
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.2e-13 80.9 113 39.8
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 1.1e-09 67.8 182 37.4
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 1.1e-09 67.8 37 86.5
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 1.9e-09 67.0 37 86.5
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 9.2e-09 64.7 37 78.4
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 7.8e-08 61.6 37 75.7
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 1.0e-07 61.2 37 70.3
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.3e-07 60.8 37 78.4
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 2.3e-07 60.1 37 70.3
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 2.5e-06 56.6 52 50.0
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 3.3e-06 56.2 47 55.3
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 4.3e-06 55.8 37 73.0
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 7.3e-06 55.1 37 73.0
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 7.3e-06 55.1 37 73.0


User provided reference genes

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