Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 0.0e+00 1240.3 657 100.0
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 0.0e+00 1223.0 657 98.6
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 1.8e-218 763.1 655 64.6
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 4.4e-217 758.4 648 65.1
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 2.9e-216 755.7 653 63.7
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 2.4e-215 752.7 653 64.5
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 1.6e-214 750.0 653 64.5
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 1.5e-212 743.4 656 63.1
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 5.1e-205 718.4 655 62.0
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 1.5e-204 716.8 632 63.0
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 1.5e-204 716.8 656 60.8
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 1.9e-204 716.5 650 61.2
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 2.5e-204 716.1 649 61.8
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 9.5e-204 714.1 654 61.5
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 1.2e-203 713.8 633 63.5
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 1.2e-201 707.2 686 59.2
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 3.4e-201 705.7 654 61.0
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.7e-200 703.4 654 60.6
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 6.4e-200 701.4 660 59.7
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 4.1e-199 698.7 649 61.0
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 9.2e-199 697.6 660 59.4
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.2e-195 687.2 713 56.4
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 3.4e-193 679.1 657 59.4
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 3.4e-193 679.1 653 59.9
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 3.8e-192 675.6 641 60.4
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 1.1e-191 674.1 647 60.0
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 1.4e-191 673.7 653 57.7
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 2.4e-191 672.9 656 59.3
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 3.2e-191 672.5 642 60.0
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 4.2e-191 672.2 676 57.0
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 3.9e-189 665.6 648 59.0
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 3.3e-188 662.5 635 59.4
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 9.6e-188 661.0 681 56.7
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 1.3e-187 660.6 681 56.7
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 2.1e-187 659.8 643 59.3
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 2.4e-186 656.4 619 59.5
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 2.4e-186 656.4 664 57.7
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 9.0e-186 654.4 642 59.2
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 3.2e-183 646.0 646 58.4
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 7.9e-182 641.3 642 58.3
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 3.0e-181 639.4 795 49.7
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 2.5e-180 636.3 649 56.7
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 6.9e-178 628.2 673 56.3
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 4.5e-177 625.5 653 56.0
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 3.8e-176 622.5 653 56.4
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 6.4e-176 621.7 664 55.9
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 6.4e-176 621.7 653 55.9
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 1.4e-175 620.5 663 54.9
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 4.6e-174 615.5 524 62.6
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 2.3e-173 613.2 635 55.4
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 4.3e-172 609.0 644 55.7
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 1.1e-170 604.4 644 55.3
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 1.6e-166 590.5 639 55.2
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 1.0e-165 587.8 650 52.6
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 1.8e-165 587.0 681 54.0
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 9.7e-164 581.3 670 52.7
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.3e-163 580.9 600 56.7
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 4.8e-163 578.9 598 56.5
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 1.4e-162 577.4 650 52.8
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 1.5e-161 573.9 759 48.0
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 2.0e-161 573.5 648 51.9
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 2.6e-161 573.2 631 54.7
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 5.9e-161 572.0 648 51.4
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 1.4e-159 567.4 644 50.9
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 2.1e-158 563.5 648 50.6
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 3.9e-157 559.3 648 50.6
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 2.8e-155 553.1 675 48.7
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 1.4e-154 550.8 676 49.0
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 9.1e-154 548.1 644 50.2
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 2.0e-153 547.0 676 49.0
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 1.3e-152 544.3 701 47.8
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 2.2e-152 543.5 666 49.8
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 8.5e-152 541.6 676 48.5
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 1.6e-150 537.3 659 50.4
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 3.0e-149 533.1 661 50.8
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 3.3e-148 529.6 650 49.2
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 5.7e-148 528.9 701 46.9
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 8.2e-147 525.0 517 57.1
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 2.3e-141 506.9 655 47.3
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 2.2e-139 500.4 450 63.1
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 2.2e-139 500.4 450 61.1
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 1.1e-138 498.0 632 49.7
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.2e-137 494.6 668 46.3
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 1.4e-133 481.1 474 59.3
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 5.2e-133 479.2 661 44.8
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 2.9e-128 463.4 421 59.9
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 2.1e-126 457.2 601 47.3
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 3.1e-122 443.4 663 42.7
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 7.7e-121 438.7 705 41.0
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 6.1e-118 429.1 488 52.7
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 8.9e-117 425.2 525 50.1
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 3.4e-116 423.3 659 44.6
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 2.7e-113 413.7 503 51.1
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 3.8e-112 409.8 654 41.4
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 2.5e-111 407.1 673 39.8
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 5.2e-109 399.4 423 56.7
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 4.1e-106 389.8 462 52.6
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 5.4e-106 389.4 651 40.2
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 1.3e-104 384.8 649 40.2
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 9.5e-103 378.6 661 39.2
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 2.7e-97 360.5 501 44.7
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 4.2e-82 310.1 841 32.6
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 6.6e-72 276.2 216 65.7
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 8.7e-72 275.8 508 37.2
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 2.8e-70 270.8 286 58.7
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 7.4e-63 246.1 338 49.7
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 8.1e-62 242.7 165 76.4
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 3.1e-61 240.7 272 57.7
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 1.1e-53 215.7 811 27.4
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 1.8e-53 214.9 216 56.0
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 4.0e-53 213.8 764 28.4
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 1.5e-52 211.8 153 71.2
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 8.7e-48 196.1 150 70.0
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 2.3e-40 171.4 218 46.3
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 6.9e-37 159.8 176 55.1
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 1.2e-33 149.1 315 38.4
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 1.7e-27 128.6 101 66.3
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 6.1e-25 120.2 187 38.5
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.9e-20 103.6 94 64.9
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 1.0e-19 102.8 78 65.4
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.7e-19 102.1 91 64.8
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.2e-19 101.7 90 68.9
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 2.6e-15 88.2 97 52.6
Sc18g0007390 Simmondsia chinensis HOM05D006229 ORTHO05D007190 6.3e-14 83.6 100 44.0
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 1.3e-11 75.9 52 67.3
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 9.4e-10 69.7 47 72.3
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 4.0e-08 64.3 93 39.8
SHI04983 Sapria himalayana HOM05D000023 ORTHO05D000014 7.5e-07 60.1 125 39.2
SEGI_21265 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 9.8e-07 59.7 50 64.0
CSS0040212 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D007190 4.8e-06 57.4 41 75.6
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 6.3e-06 57.0 43 74.4


User provided reference genes

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