Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 3.5e-197 691.4 345 100.0
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 2.2e-159 565.8 345 78.0
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 2.2e-159 565.8 345 78.3
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.1e-158 563.5 345 78.3
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 1.6e-157 559.7 344 77.6
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 2.5e-155 552.4 345 76.2
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.3e-155 552.0 345 76.2
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 4.3e-155 551.6 345 75.9
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 8.1e-154 547.4 375 71.7
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 2.4e-153 545.8 345 76.8
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 4.0e-153 545.0 345 76.2
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 5.3e-153 544.7 345 76.2
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 6.9e-153 544.3 345 75.9
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 2.0e-152 542.7 346 74.9
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 9.9e-152 540.4 349 74.2
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 2.4e-150 535.8 345 74.5
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 3.2e-150 535.4 354 74.9
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 4.2e-150 535.0 354 74.3
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 1.2e-149 533.5 342 75.1
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 7.9e-149 530.8 349 74.8
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 1.3e-148 530.0 345 73.6
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 5.6e-147 524.6 343 75.5
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 7.4e-147 524.2 343 73.5
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 1.3e-146 523.5 349 73.4
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 1.3e-146 523.5 349 74.5
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 2.8e-146 522.3 345 71.3
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 3.6e-146 521.9 350 73.7
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 4.8e-146 521.5 347 72.9
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 6.2e-146 521.2 348 73.9
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 6.2e-146 521.2 345 70.7
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 6.2e-146 521.2 346 71.4
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 8.1e-146 520.8 374 69.0
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 8.1e-146 520.8 344 70.6
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 1.5e-144 516.5 343 73.2
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 5.8e-144 514.6 348 72.4
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 1.3e-143 513.5 345 71.3
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 4.9e-143 511.5 349 70.8
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 4.9e-143 511.5 345 73.9
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 8.4e-143 510.8 306 78.4
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 8.4e-143 510.8 347 71.5
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 1.1e-142 510.4 330 74.2
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 1.1e-142 510.4 348 72.7
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 1.9e-142 509.6 350 72.3
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 3.2e-142 508.8 340 72.1
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 7.1e-142 507.7 343 72.9
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 9.3e-142 507.3 346 71.7
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 1.6e-141 506.5 348 70.1
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.1e-141 506.1 345 71.0
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 3.5e-141 505.4 345 71.6
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 7.9e-141 504.2 350 70.3
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 1.3e-140 503.4 342 69.3
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 3.0e-140 502.3 345 69.0
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 8.7e-140 500.7 346 72.0
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.1e-139 500.4 346 72.5
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 3.3e-139 498.8 355 70.1
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 7.4e-139 497.7 340 72.6
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.6e-138 496.5 306 76.1
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 2.1e-138 496.1 345 68.1
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 2.1e-138 496.1 345 71.6
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 2.1e-138 496.1 340 71.5
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 2.8e-138 495.7 346 71.1
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 2.8e-138 495.7 346 71.1
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 6.2e-138 494.6 340 71.5
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 8.1e-138 494.2 362 66.0
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 2.4e-137 492.7 316 73.1
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 9.0e-137 490.7 342 70.5
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.3e-135 486.9 343 71.4
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 1.7e-135 486.5 346 69.7
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 6.5e-135 484.6 346 68.5
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 6.5e-135 484.6 304 75.7
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 5.5e-134 481.5 346 67.1
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 6.0e-133 478.0 340 68.5
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 6.0e-133 478.0 305 75.4
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 1.1e-131 473.8 379 62.5
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 1.1e-129 467.2 351 67.8
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 1.5e-128 463.4 346 66.5
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 2.6e-128 462.6 292 76.0
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 2.2e-127 459.5 342 64.9
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 3.8e-127 458.8 326 68.1
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 2.5e-126 456.1 316 69.6
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 1.6e-125 453.4 335 65.1
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 2.7e-125 452.6 311 70.1
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 6.1e-125 451.4 316 69.6
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 1.8e-124 449.9 350 62.9
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 3.0e-124 449.1 299 71.6
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 3.9e-124 448.7 310 70.3
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 5.1e-124 448.4 285 76.1
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 5.1e-124 448.4 362 62.2
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 6.7e-124 448.0 279 74.2
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 1.9e-123 446.4 332 66.6
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 1.9e-123 446.4 316 68.7
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 3.3e-123 445.7 317 67.8
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 9.7e-123 444.1 315 68.3
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 9.7e-123 444.1 342 64.3
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.3e-122 443.7 332 65.7
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 4.8e-122 441.8 279 75.6
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 6.9e-121 438.0 279 72.8
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 4.5e-120 435.3 343 61.8
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 5.9e-120 434.9 308 68.5
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 7.7e-120 434.5 305 68.5
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 7.7e-120 434.5 283 72.8
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.3e-119 433.7 343 60.1
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 2.9e-119 432.6 348 62.9
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 8.5e-119 431.0 341 61.6
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 7.2e-118 427.9 307 65.1
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 1.2e-117 427.2 331 62.8
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.4e-116 423.7 344 61.3
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 1.8e-116 423.3 331 62.5
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 1.8e-116 423.3 314 64.0
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 1.8e-116 423.3 331 62.5
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 6.7e-116 421.4 341 60.1
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 8.8e-116 421.0 322 62.7
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 5.7e-115 418.3 314 63.4
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 7.4e-115 417.9 304 65.5
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.9e-110 403.3 309 61.8
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 3.6e-109 399.1 261 72.8
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 3.0e-108 396.0 385 54.8
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.5e-107 393.7 341 60.7
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 5.7e-107 391.7 318 62.9
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 4.1e-105 385.6 308 63.6
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 7.7e-104 381.3 342 59.6
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 1.1e-102 377.5 362 56.1
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 1.5e-102 377.1 345 58.0
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 7.2e-102 374.8 281 62.6
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 9.4e-102 374.4 345 57.7
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 6.1e-101 371.7 251 71.7
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 1.8e-97 360.1 303 56.4
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.2e-96 357.5 327 54.4
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 2.0e-96 356.7 340 55.3
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 5.9e-96 355.1 313 54.3
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 7.2e-94 348.2 309 53.7
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 1.2e-88 330.9 328 50.6
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 7.7e-88 328.2 309 49.5
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 3.6e-85 319.3 342 47.7
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 6.8e-84 315.1 229 67.7
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 9.8e-83 311.2 234 63.7
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 3.7e-82 309.3 228 67.5
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 5.4e-81 305.4 281 55.5
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 5.4e-81 305.4 320 54.4
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.7e-75 285.4 164 82.3
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 5.7e-75 285.4 212 65.6
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 6.4e-58 228.8 140 78.6
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.1e-57 228.0 162 66.0
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.1e-57 228.0 162 66.0
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 5.6e-46 189.1 118 74.6
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.8e-45 186.8 112 76.8
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 3.4e-43 179.9 339 32.2
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.7e-42 177.6 112 77.7
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 1.3e-37 161.4 316 34.5
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 7.6e-35 152.1 129 59.7
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.7e-32 143.7 164 47.6
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 1.5e-30 137.9 325 30.8
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 1.9e-25 120.9 358 30.2
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 2.4e-25 120.6 169 41.4
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 3.5e-24 116.7 87 65.5
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 3.5e-16 90.1 279 25.4
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 7.9e-16 89.0 105 43.8
FAN23G0103 Fragaria x ananassa HOM05D004652 ORTHO05D198901 8.5e-10 68.9 116 38.8


User provided reference genes

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