Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 3.0e-301 1037.7 521 100.0
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 6.5e-139 498.4 534 52.1
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 9.1e-133 478.0 535 51.2
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 9.4e-130 468.0 516 50.2
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 5.2e-128 462.2 523 50.1
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 6.8e-128 461.8 523 50.1
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.2e-127 461.1 533 49.9
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 2.0e-124 450.3 524 49.2
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 5.0e-123 445.7 523 48.8
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.2e-121 441.0 527 48.4
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.8e-117 427.2 498 48.0
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.4e-117 426.8 525 47.2
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 2.7e-116 423.3 531 47.8
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.8e-112 410.6 511 45.4
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.8e-112 410.6 490 46.1
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 6.4e-110 402.1 482 45.9
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 2.4e-109 400.2 557 43.4
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.9e-107 392.9 488 46.5
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 8.0e-105 385.2 499 44.9
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.1e-104 384.8 491 44.2
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.6e-103 380.2 513 42.9
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.4e-103 379.8 513 42.3
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 3.4e-103 379.8 468 45.3
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 5.8e-103 379.0 502 44.4
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 2.9e-102 376.7 581 42.2
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.9e-102 375.9 522 43.1
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 1.9e-101 374.0 376 53.5
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.2e-101 373.2 503 43.9
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 4.1e-101 372.9 513 42.1
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.6e-100 370.9 511 42.3
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.0e-99 368.2 550 43.6
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 3.0e-99 366.7 398 50.3
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.5e-98 364.4 494 43.1
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.9e-98 364.0 486 41.8
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.6e-97 360.9 522 40.0
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.7e-97 359.4 374 51.9
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 4.7e-97 359.4 515 41.6
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 2.6e-95 353.6 537 42.5
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.4e-95 352.8 491 43.4
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 9.9e-95 351.7 519 39.9
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.7e-94 350.9 517 40.0
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 4.9e-94 349.4 537 41.7
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 6.4e-94 349.0 541 39.6
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.1e-93 348.2 546 39.6
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.1e-93 348.2 495 43.2
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 3.2e-93 346.7 489 43.4
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 9.2e-93 345.1 507 40.0
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 9.2e-93 345.1 507 40.0
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.3e-91 341.3 479 42.8
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.5e-90 337.8 482 42.7
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.5e-90 337.0 479 42.4
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 4.7e-89 332.8 537 38.5
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.5e-87 327.8 522 38.3
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 8.4e-86 322.0 532 38.3
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 7.1e-85 318.9 577 36.2
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 7.1e-85 318.9 545 38.2
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.1e-84 317.4 544 39.7
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 4.6e-84 316.2 514 37.7
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 4.6e-84 316.2 499 37.3
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 6.0e-84 315.8 513 39.8
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.4e-80 304.7 526 35.2
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 1.8e-80 304.3 523 36.9
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 2.4e-80 303.9 435 41.1
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.7e-78 297.7 432 40.7
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.1e-77 295.0 470 39.8
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.4e-77 293.9 520 36.2
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.4e-77 293.9 474 39.5
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.2e-77 293.5 544 37.7
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.2e-77 293.5 544 37.7
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 5.4e-77 292.7 548 38.0
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 3.5e-76 290.0 517 36.6
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.3e-75 287.3 419 42.5
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 5.1e-75 286.2 525 37.1
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.5e-74 284.6 494 36.0
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 4.3e-74 283.1 521 37.2
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 9.6e-74 282.0 542 35.4
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 3.6e-73 280.0 533 36.8
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 2.4e-72 277.3 512 37.1
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 4.0e-72 276.6 534 35.2
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 1.2e-71 275.0 514 36.4
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 1.5e-71 274.6 504 35.1
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 3.8e-70 270.0 409 39.4
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 4.9e-70 269.6 516 36.2
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 6.4e-70 269.2 549 35.9
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.4e-69 267.3 531 35.6
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 3.2e-69 266.9 535 33.8
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 5.4e-69 266.2 512 36.1
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.2e-68 265.0 519 35.1
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 3.5e-68 263.5 519 36.2
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 7.9e-68 262.3 544 33.6
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 7.9e-68 262.3 502 35.9
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 5.1e-67 259.6 483 38.1
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 8.7e-67 258.8 519 36.4
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 8.7e-67 258.8 433 37.6
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.1e-66 258.5 518 35.9
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.5e-66 258.1 482 36.3
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.5e-66 257.3 525 33.5
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 3.3e-66 256.9 530 33.2
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 7.4e-66 255.8 503 35.4
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.3e-65 255.0 520 35.0
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.8e-65 253.8 420 36.9
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.8e-65 253.8 517 33.7
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 6.2e-65 252.7 420 37.6
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 6.9e-64 249.2 529 32.5
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 9.0e-64 248.8 519 33.1
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.0e-63 247.7 524 33.4
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.7e-62 244.6 502 35.9
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 2.9e-62 243.8 507 37.1
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.8e-62 243.4 524 33.0
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 4.9e-62 243.0 437 35.2
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 2.5e-61 240.7 519 35.5
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.5e-61 239.6 446 34.8
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 7.1e-61 239.2 518 32.8
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 7.1e-61 239.2 520 33.1
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 9.3e-61 238.8 502 37.1
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 9.3e-61 238.8 439 35.8
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.2e-60 238.4 524 31.9
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 2.1e-60 237.7 507 35.9
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 2.1e-60 237.7 443 35.4
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 2.1e-60 237.7 526 32.5
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 6.0e-60 236.1 267 49.8
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 7.9e-60 235.7 520 33.8
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.8e-59 234.6 539 30.8
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.5e-58 231.5 523 31.0
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 1.9e-58 231.1 437 35.7
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.3e-57 228.4 525 31.4
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 1.3e-57 228.4 527 30.9
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.6e-57 228.0 500 33.4
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 2.1e-57 227.6 525 31.6
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 2.1e-57 227.6 275 45.8
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.8e-57 227.3 509 32.4
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.8e-56 224.6 469 33.7
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.3e-54 218.4 522 32.0
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 6.1e-52 209.5 456 33.1
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 1.3e-51 208.4 483 31.9
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 3.0e-51 207.2 502 31.3
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 8.7e-51 205.7 435 33.1
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 6.9e-48 196.1 398 34.2
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 6.9e-48 196.1 521 29.8
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 4.6e-44 183.3 522 31.8
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.0e-43 182.2 487 30.8
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 2.0e-42 177.9 264 40.9
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 7.4e-42 176.0 519 29.5
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 7.4e-42 176.0 233 46.4
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 2.9e-38 164.1 282 37.2
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 2.9e-38 164.1 308 36.0
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 5.0e-38 163.3 238 41.2
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 1.9e-37 161.4 280 36.8
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 3.2e-37 160.6 266 36.5
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 5.5e-37 159.8 284 35.2
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 1.8e-35 154.8 242 38.4
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 5.1e-35 153.3 256 37.5
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 3.7e-33 147.1 301 30.2
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-32 145.6 254 37.0
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 1.0e-30 139.0 248 35.5
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.7e-30 138.3 276 35.5
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 2.1e-28 131.3 271 33.2
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.1e-26 125.6 261 34.5
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.4e-24 117.9 239 36.0
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.5e-21 108.6 274 31.0
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 1.9e-21 108.2 266 32.0
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 1.9e-21 108.2 257 30.4
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 4.7e-20 103.6 245 32.7
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.0e-18 98.2 279 31.5
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 3.7e-17 94.0 125 37.6
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 7.7e-15 86.3 140 37.9
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 5.0e-14 83.6 117 35.9
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 8.8e-11 72.8 89 46.1
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.2e-10 72.4 184 29.3
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 4.4e-10 70.5 243 26.3
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 4.4e-10 70.5 165 33.9
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 4.9e-09 67.0 165 33.3
MELO3C006802.2 Cucumis melo HOM05D000885 ORTHO05D001238 4.5e-07 60.5 64 45.3


User provided reference genes

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