Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 9.5e-107 390.2 198 100.0
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 6.7e-44 181.4 186 57.0
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 3.7e-42 175.6 194 49.5
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 3.1e-41 172.6 189 56.1
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 1.2e-40 170.6 187 57.2
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 1.2e-40 170.6 191 51.3
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 3.4e-40 169.1 198 54.0
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.0e-39 167.5 177 52.0
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.7e-39 166.8 187 54.5
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.0e-39 165.2 205 49.3
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.1e-38 164.1 187 52.9
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.9e-38 163.3 189 52.4
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 2.5e-38 162.9 181 51.9
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 3.2e-38 162.5 194 50.5
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 3.2e-38 162.5 194 49.0
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 4.2e-38 162.2 177 51.4
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 5.5e-38 161.8 189 50.3
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 7.2e-38 161.4 191 53.4
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 1.2e-37 160.6 193 51.3
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.7e-37 159.5 197 47.7
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 6.1e-37 158.3 190 53.7
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 7.9e-37 157.9 191 49.2
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.0e-36 157.5 205 48.8
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.4e-36 157.1 205 47.3
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.4e-36 157.1 191 48.7
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 3.9e-36 155.6 197 48.2
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 3.9e-36 155.6 209 48.8
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 5.1e-36 155.2 214 48.1
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 1.1e-35 154.1 193 50.3
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-35 154.1 190 48.9
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 3.3e-35 152.5 194 48.5
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 5.7e-35 151.8 184 44.6
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.4e-35 151.4 190 47.9
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 1.3e-34 150.6 191 48.7
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 1.7e-34 150.2 189 49.2
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 1.7e-34 150.2 187 46.5
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 2.2e-34 149.8 192 47.9
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 2.2e-34 149.8 195 45.1
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 2.8e-34 149.4 202 47.5
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.7e-34 149.1 182 48.4
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 6.3e-34 148.3 194 47.9
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.2e-34 147.9 185 47.6
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 1.1e-33 147.5 194 49.5
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 1.4e-33 147.1 180 47.8
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 3.1e-33 146.0 197 47.7
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 5.3e-33 145.2 187 50.8
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 7.0e-33 144.8 194 47.4
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 9.1e-33 144.4 195 46.2
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 9.1e-33 144.4 188 47.9
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.2e-32 144.1 186 45.7
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 2.0e-32 143.3 191 47.1
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.6e-32 142.9 196 44.9
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 3.5e-32 142.5 191 44.0
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 3.5e-32 142.5 191 47.1
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.3e-31 140.6 187 44.9
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.3e-31 140.6 211 45.5
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.3e-31 140.6 187 47.1
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 3.8e-31 139.0 189 41.3
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.0e-31 138.7 184 47.3
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 6.5e-31 138.3 197 53.3
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.5e-30 137.1 201 48.8
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.5e-30 137.1 185 47.6
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 1.9e-30 136.7 211 44.1
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.5e-30 136.3 202 46.0
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 3.2e-30 136.0 195 45.1
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 5.5e-30 135.2 206 45.6
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.2e-30 134.8 183 45.9
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 7.2e-30 134.8 196 47.4
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 9.4e-30 134.4 207 45.4
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 9.4e-30 134.4 207 45.4
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 9.4e-30 134.4 207 45.4
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.1e-29 133.3 195 46.7
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.1e-29 133.3 204 43.6
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.1e-29 133.3 196 46.4
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 4.7e-29 132.1 198 45.5
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 4.7e-29 132.1 203 45.3
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 6.1e-29 131.7 196 44.9
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.0e-28 131.0 190 46.3
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.0e-28 131.0 195 44.6
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.4e-28 130.6 195 44.6
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 1.4e-28 130.6 201 47.8
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 1.4e-28 130.6 213 46.9
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.4e-28 130.6 205 42.9
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.8e-28 130.2 193 47.7
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 3.0e-28 129.4 195 44.1
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 3.0e-28 129.4 195 44.1
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.0e-28 129.4 187 45.5
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.0e-28 129.0 179 48.6
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.8e-28 127.9 186 43.5
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 8.8e-28 127.9 214 43.0
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 8.8e-28 127.9 207 42.5
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.1e-27 127.5 187 42.8
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 1.1e-27 127.5 187 48.7
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.5e-27 127.1 191 45.5
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.5e-27 127.1 180 44.4
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 2.6e-27 126.3 194 52.6
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 2.6e-27 126.3 198 42.9
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 3.3e-27 125.9 189 44.4
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 4.4e-27 125.6 200 44.5
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 4.4e-27 125.6 187 46.0
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 4.4e-27 125.6 185 45.4
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 5.7e-27 125.2 192 46.9
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 5.7e-27 125.2 189 41.3
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 9.7e-27 124.4 218 44.5
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.3e-26 124.0 192 45.8
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 1.7e-26 123.6 182 43.4
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 2.2e-26 123.2 183 43.7
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 2.2e-26 123.2 196 44.4
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 2.8e-26 122.9 190 42.6
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.8e-26 122.1 174 44.3
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.1e-25 120.9 192 42.7
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.4e-25 120.6 187 40.6
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-25 120.6 191 42.9
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.4e-25 120.6 191 42.9
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.8e-25 120.2 178 43.3
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 4.1e-25 119.0 187 39.6
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 9.1e-25 117.9 192 42.2
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 9.1e-25 117.9 192 42.2
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 9.1e-25 117.9 192 42.2
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 1.2e-24 117.5 184 43.5
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 1.2e-24 117.5 183 45.4
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.2e-24 117.5 182 40.1
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.2e-24 117.5 185 43.8
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 1.2e-24 117.5 185 43.8
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 1.6e-24 117.1 185 43.8
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 1.6e-24 117.1 185 43.8
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-24 117.1 169 45.0
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 2.0e-24 116.7 183 45.9
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.0e-24 116.7 185 43.2
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 4.5e-24 115.5 182 42.3
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 7.7e-24 114.8 182 42.3
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 1.0e-23 114.4 186 45.2
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 2.9e-23 112.8 181 44.8
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 5.0e-23 112.1 181 43.1
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 5.0e-23 112.1 178 48.3
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.5e-23 111.7 187 41.2
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 8.5e-23 111.3 209 43.5
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.2e-22 109.4 151 46.4
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.0e-20 104.4 171 40.9
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 8.8e-20 101.3 178 37.1
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 8.8e-20 101.3 192 37.0
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.2e-19 100.9 183 35.0
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 1.5e-19 100.5 199 38.2
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.0e-19 100.1 187 38.5
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 3.4e-19 99.4 178 38.2
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 4.4e-19 99.0 179 37.4
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 7.5e-19 98.2 289 28.7
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.3e-18 97.4 194 37.6
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-18 97.1 182 36.8
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 3.7e-18 95.9 168 40.5
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 8.3e-18 94.7 181 37.6
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.6e-16 90.5 175 39.4
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.7e-15 87.0 178 37.6
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.9e-15 86.3 124 46.8
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 6.5e-15 85.1 181 35.4
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.5e-15 85.1 155 40.0
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.1e-14 84.3 104 45.2
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 9.4e-14 81.3 184 38.0
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-13 80.1 178 37.6
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 6.1e-13 78.6 191 33.5
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.0e-12 77.8 98 42.9
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.5e-11 73.9 122 41.0
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 5.7e-11 72.0 154 37.7
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 1.3e-10 70.9 196 37.8
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-10 70.5 108 41.7
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.3e-10 68.6 120 40.0
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 8.3e-10 68.2 173 29.5
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 1.2e-08 64.3 121 35.5
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.7e-08 63.2 123 38.2
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 2.7e-08 63.2 200 28.5
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 4.5e-08 62.4 194 36.1
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.9e-07 59.7 120 35.8
ATR0580G176 Amborella trichopoda HOM05D003790 ORTHO05D004481 8.6e-07 58.2 103 39.8
MBI07_g42010_MAGBIO Magnolia biondii HOM05D001131 ORTHO05D000972 1.5e-06 57.4 197 28.4
TAR629G3365 Trochodendron aralioides HOM05D001131 ORTHO05D000972 1.9e-06 57.0 195 24.1
VMungo0464G2064 Vigna mungo HOM05D001131 ORTHO05D000972 1.9e-06 57.0 206 25.7
Phvul.004G067900 Phaseolus vulgaris HOM05D001131 ORTHO05D000972 4.3e-06 55.8 198 26.3
Thecc.04G051500 Theobroma cacao HOM05D001131 ORTHO05D000972 5.6e-06 55.5 197 25.9
Aqoxy5G02997 Aquilegia oxysepala HOM05D001131 ORTHO05D000972 9.5e-06 54.7 198 25.3
arahy.Tifrunner.gnm1.ann1.I6Q85W Arachis hypogaea HOM05D001131 ORTHO05D000972 9.5e-06 54.7 216 25.0
Sed0004223 Sechium edule HOM05D001131 ORTHO05D000972 9.5e-06 54.7 201 28.9


User provided reference genes

Program Settings