Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2493 Cannabis sativa HOM05D008625 ORTHO05D010623 8.0e-78 294.3 223 100.0
MD15G1091300 Malus domestica HOM05D001131 ORTHO05D010623 8.1e-22 108.2 199 38.2
Prupe.1G446200 Prunus persica HOM05D001131 ORTHO05D010623 1.4e-21 107.5 197 38.1
MD08G1111800 Malus domestica HOM05D008625 ORTHO05D010623 3.4e-20 102.8 199 37.2
Sabra06G0185000 Salix brachista HOM05D001131 ORTHO05D000972 4.5e-20 102.4 200 32.5
Potri.006G236700 Populus trichocarpa HOM05D001131 ORTHO05D000972 7.6e-20 101.7 198 32.8
Potri.018G046500 Populus trichocarpa HOM05D001131 ORTHO05D000972 9.9e-20 101.3 204 31.9
Manes.03G059800 Manihot esculenta HOM05D001131 ORTHO05D000972 2.4e-18 96.7 219 31.5
GSVIVG01035287001 Vitis vinifera HOM05D001131 ORTHO05D000972 2.4e-18 96.7 203 32.0
Nn8g39098 Nelumbo nucifera HOM05D001131 ORTHO05D000972 1.6e-17 94.0 202 30.2
Manes.16G074200 Manihot esculenta HOM05D001131 ORTHO05D000972 2.1e-17 93.6 219 35.6
TPR.G15108 Trifolium pratense HOM05D008625 ORTHO05D010623 2.1e-17 93.6 191 36.1
TAR624G0151 Trochodendron aralioides HOM05D001131 ORTHO05D000972 7.9e-17 91.7 215 29.3
Cpa.g.sc7.202 Carica papaya HOM05D008625 ORTHO05D010623 1.8e-16 90.5 191 38.2
Hma1.2p1_0945F.1_g240300 Hydrangea macrophylla HOM05D001131 ORTHO05D000972 1.8e-16 90.5 90 48.9
Gohir.A06G092000 Gossypium hirsutum HOM05D001131 ORTHO05D010623 3.0e-16 89.7 203 33.0
Gorai.010G105500 Gossypium raimondii HOM05D001131 ORTHO05D010623 3.9e-16 89.4 203 32.5
TWI63G1453 Tripterygium wilfordii HOM05D001131 ORTHO05D000972 5.1e-16 89.0 199 32.2
Gohir.D06G091500 Gossypium hirsutum HOM05D001131 ORTHO05D010623 8.7e-16 88.2 203 32.5
Thecc.09G047000 Theobroma cacao HOM05D001131 ORTHO05D010623 8.7e-16 88.2 195 30.8
TAR383G0743 Trochodendron aralioides HOM05D001131 ORTHO05D000972 8.7e-16 88.2 86 47.7
CSS0013249 Camellia sinensis var. sinensis HOM05D001131 ORTHO05D000972 1.1e-15 87.8 94 43.6
Peaxi162Scf00665g00038 Petunia axillaris HOM05D001131 ORTHO05D000972 3.3e-15 86.3 202 29.7
Glyma.06G087400 Glycine max HOM05D008625 ORTHO05D010623 5.6e-15 85.5 195 32.3
Ciclev10009617m.g Citrus clementina HOM05D001131 ORTHO05D000972 7.4e-15 85.1 206 30.1
DCAR_028670 Daucus carota HOM05D001131 ORTHO05D000972 1.3e-14 84.3 96 43.8
VMungo1309G2682 Vigna mungo HOM05D008625 ORTHO05D010623 1.6e-14 84.0 193 32.6
Psat5g020440 Pisum sativum HOM05D008625 ORTHO05D010623 2.1e-14 83.6 193 33.2
Medtr3g109920 Medicago truncatula HOM05D008625 ORTHO05D010623 2.8e-14 83.2 192 30.7
FAN20G1640 Fragaria x ananassa HOM05D008625 ORTHO05D010623 4.8e-14 82.4 175 32.0
Psat5g020400 Pisum sativum HOM05D008625 ORTHO05D010623 4.8e-14 82.4 192 32.3
Lalb_Chr08g0242961 Lupinus albus HOM05D008625 ORTHO05D010623 6.2e-14 82.0 99 42.4
FAN15G2009 Fragaria x ananassa HOM05D008625 ORTHO05D010623 8.1e-14 81.6 175 32.0
Glyma.04G085800 Glycine max HOM05D008625 ORTHO05D010623 8.1e-14 81.6 194 29.9
Medtr3g109900 Medicago truncatula HOM05D008625 ORTHO05D010623 1.4e-13 80.9 192 30.7
Sabra18G0045000 Salix brachista HOM05D001131 ORTHO05D000972 1.8e-13 80.5 181 27.1
Aqoxy7G03882 Aquilegia oxysepala HOM05D001131 ORTHO05D000972 4.0e-13 79.3 98 38.8
MD02G1064200 Malus domestica HOM05D001131 ORTHO05D000972 4.0e-13 79.3 203 29.1
Phvul.009G111200 Phaseolus vulgaris HOM05D008625 ORTHO05D010623 4.0e-13 79.3 193 31.1
Cc06_g10320 Coffea canephora HOM05D001131 ORTHO05D000972 6.9e-13 78.6 99 43.4
BcaC09g52083 Brassica carinata HOM05D008625 ORTHO05D010623 1.2e-12 77.8 217 32.7
C01p06020 Brassica napus HOM05D008625 ORTHO05D010623 1.2e-12 77.8 217 32.7
MBI04_g06590_MAGBIO Magnolia biondii HOM05D001131 ORTHO05D000972 1.5e-12 77.4 202 28.7
PGR142G2343 Punica granatum HOM05D001131 ORTHO05D000972 1.5e-12 77.4 198 27.8
MD15G1195000 Malus domestica HOM05D001131 ORTHO05D000972 2.0e-12 77.0 101 41.6
THA.LOC104803750 Tarenaya hassleriana HOM05D008625 ORTHO05D010623 2.0e-12 77.0 201 32.3
arahy.Tifrunner.gnm1.ann1.66V3J9 Arachis hypogaea HOM05D008625 ORTHO05D010623 2.6e-12 76.6 193 32.1
Cpa.g.sc40.62 Carica papaya HOM05D001131 ORTHO05D000972 2.6e-12 76.6 203 29.1
Cfa003195 Carpinus fangiana HOM05D001131 ORTHO05D000972 2.6e-12 76.6 205 28.8
A01p05420 Brassica napus HOM05D008625 ORTHO05D010623 3.4e-12 76.3 218 33.0
BraA01t00516Z Brassica rapa HOM05D008625 ORTHO05D010623 3.4e-12 76.3 218 33.0
Carub.0007s0763 Capsella rubella HOM05D008625 ORTHO05D010623 3.4e-12 76.3 201 32.3
FvH4_2g35430 Fragaria vesca HOM05D008625 ORTHO05D010623 3.4e-12 76.3 181 32.0
Prupe.7G221500 Prunus persica HOM05D001131 ORTHO05D000972 3.4e-12 76.3 203 29.6
BolC1t00594H Brassica oleracea HOM05D008625 ORTHO05D010623 4.5e-12 75.9 218 33.0
PGSC0003DMG400000363 Solanum tuberosum HOM05D001131 ORTHO05D000972 5.8e-12 75.5 101 39.6
RcHm_v2.0_Chr6g0306461 Rosa chinensis HOM05D008625 ORTHO05D010623 7.6e-12 75.1 169 32.5
Aqoxy7G01451 Aquilegia oxysepala HOM05D001131 ORTHO05D000972 1.0e-11 74.7 212 29.7
FAN27G2073 Fragaria x ananassa HOM05D008625 ORTHO05D010623 1.3e-11 74.3 181 31.5
Lj1g0026047 Lotus japonicus HOM05D008625 ORTHO05D010623 1.3e-11 74.3 190 28.9
Duzib187G1193 Durio zibethinus HOM05D001131 ORTHO05D000972 2.2e-11 73.6 211 28.9
QL02p042102 Quercus lobata HOM05D001131 ORTHO05D000972 2.2e-11 73.6 220 29.1
BcaC09g52084 Brassica carinata HOM05D008625 ORTHO05D010623 2.9e-11 73.2 212 33.0
Ca_15580_v3 Cicer arietinum L. HOM05D008625 ORTHO05D010623 2.9e-11 73.2 168 32.1
Ciclev10009423m.g Citrus clementina HOM05D001131 ORTHO05D000972 3.8e-11 72.8 214 26.6
Actinidia09444 Actinidia chinensis HOM05D001131 ORTHO05D000972 4.9e-11 72.4 195 28.2
AL7G18860 Arabidopsis lyrata HOM05D008625 ORTHO05D010623 4.9e-11 72.4 204 31.9
A03p61610 Brassica napus HOM05D008625 ORTHO05D010623 4.9e-11 72.4 208 30.3
A08p17870 Brassica napus HOM05D008625 ORTHO05D010623 4.9e-11 72.4 210 31.0
C03p86970 Brassica napus HOM05D008625 ORTHO05D010623 4.9e-11 72.4 225 30.7
C03p86990 Brassica napus HOM05D008625 ORTHO05D010623 4.9e-11 72.4 225 30.7
BraA08t33739Z Brassica rapa HOM05D008625 ORTHO05D010623 4.9e-11 72.4 210 31.0
Rhsim05G0041000 Rhododendron simsii HOM05D001131 ORTHO05D000972 4.9e-11 72.4 91 40.7
Sp7g30630 Schrenkiella parvula HOM05D008625 ORTHO05D010623 4.9e-11 72.4 218 32.1
AT4G32860 Arabidopsis thaliana HOM05D008625 ORTHO05D010623 6.5e-11 72.0 204 31.9
BolC3t20994H Brassica oleracea HOM05D008625 ORTHO05D010623 6.5e-11 72.0 210 31.9
Aa31sc706G10 Aethionema arabicum HOM05D008625 ORTHO05D010623 8.4e-11 71.6 208 31.7
CARHR240860 Cardamine hirsuta HOM05D008625 ORTHO05D010623 8.4e-11 71.6 206 31.6
Nitab4.5_0000566g0010 Nicotiana tabacum HOM05D001131 ORTHO05D000972 8.4e-11 71.6 102 39.2
BcaNung06387 Brassica carinata HOM05D008625 ORTHO05D010623 1.1e-10 71.2 208 30.3
C07p59370 Brassica napus HOM05D008625 ORTHO05D010623 1.1e-10 71.2 208 30.3
BolC7t46381H Brassica oleracea HOM05D008625 ORTHO05D010623 1.1e-10 71.2 208 30.3
CSS0010038 Camellia sinensis var. sinensis HOM05D001131 ORTHO05D000972 1.1e-10 71.2 86 39.5
CSS0029495 Camellia sinensis var. sinensis HOM05D001131 ORTHO05D000972 1.1e-10 71.2 86 39.5
CiPaw.04G158900 Carya illinoinensis HOM05D001131 ORTHO05D000972 1.1e-10 71.2 212 29.2
Thhalv10026293m.g Eutrema salsugineum HOM05D008625 ORTHO05D010623 1.1e-10 71.2 206 31.1
Lalb_Chr05g0223161 Lupinus albus HOM05D001131 ORTHO05D000972 1.1e-10 71.2 197 27.4
Haze_25811 Corylus avellana HOM05D001131 ORTHO05D000972 1.4e-10 70.9 206 28.2
Lj4g0009018 Lotus japonicus HOM05D001131 ORTHO05D000972 1.9e-10 70.5 211 33.2
BraA03t15203Z Brassica rapa HOM05D008625 ORTHO05D010623 2.5e-10 70.1 208 29.8
Manes.16G110200 Manihot esculenta HOM05D001131 ORTHO05D000972 2.5e-10 70.1 205 29.3
Sopen12g003340 Solanum pennellii HOM05D001131 ORTHO05D000972 2.5e-10 70.1 105 37.1
Duzib150G0752 Durio zibethinus HOM05D001131 ORTHO05D000972 3.2e-10 69.7 222 28.4
Dinv23382 Davidia involucrata HOM05D001131 ORTHO05D000972 4.2e-10 69.3 103 39.8
PSO210G5578 Papaver somniferum HOM05D001131 ORTHO05D000972 4.2e-10 69.3 109 36.7
RcHm_v2.0_Chr2g0091651 Rosa chinensis HOM05D001131 ORTHO05D000972 5.5e-10 68.9 89 41.6
FAN19G0216 Fragaria x ananassa HOM05D001131 ORTHO05D000972 7.1e-10 68.6 91 40.7
COL.COLO4_20990 Corchorus olitorius HOM05D001131 ORTHO05D010623 9.3e-10 68.2 113 39.8
Oeu053163.1 Olea europaea HOM05D001131 ORTHO05D000972 9.3e-10 68.2 105 36.2
Thecc.09G102000 Theobroma cacao HOM05D001131 ORTHO05D000972 9.3e-10 68.2 89 38.2
Solyc12g008380.1 Solanum lycopersicum HOM05D001131 ORTHO05D000972 1.2e-09 67.8 201 26.4
DCAR_032098 Daucus carota HOM05D001131 ORTHO05D000972 1.6e-09 67.4 101 36.6
Oeu064195.1 Olea europaea HOM05D001131 ORTHO05D000972 2.1e-09 67.0 104 36.5
MELO3C004582.2 Cucumis melo HOM05D001131 ORTHO05D000972 2.7e-09 66.6 202 25.2
FvH4_1g05960 Fragaria vesca HOM05D001131 ORTHO05D000972 2.7e-09 66.6 90 40.0
CsaV3_2G001980 Cucumis sativus L. HOM05D001131 ORTHO05D000972 3.5e-09 66.2 202 25.2
Eucgr.C01005 Eucalyptus grandis HOM05D001131 ORTHO05D000972 3.5e-09 66.2 88 39.8
SalBow5G1205 Salvia bowleyana HOM05D001131 ORTHO05D000972 3.5e-09 66.2 83 39.8
VMungo1080G0310 Vigna mungo HOM05D001131 ORTHO05D000972 4.6e-09 65.9 196 27.6
CiPaw.01G232200 Carya illinoinensis HOM05D001131 ORTHO05D000972 6.0e-09 65.5 196 29.6
MBI01_g15519_MAGBIO Magnolia biondii HOM05D001131 ORTHO05D000972 6.0e-09 65.5 203 28.1
ClCG11G002230 Citrullus lanatus HOM05D001131 ORTHO05D000972 7.9e-09 65.1 202 25.2
Hma1.2p1_0012F.1_g007330 Hydrangea macrophylla HOM05D001131 ORTHO05D000972 7.9e-09 65.1 54 48.1
CiPaw.03G226200 Carya illinoinensis HOM05D001131 ORTHO05D000972 1.0e-08 64.7 207 28.0
Gorai.001G008700 Gossypium raimondii HOM05D001131 ORTHO05D000972 1.0e-08 64.7 91 38.5
Gohir.D07G008600 Gossypium hirsutum HOM05D001131 ORTHO05D000972 1.3e-08 64.3 211 28.0
Potri.018G086500 Populus trichocarpa HOM05D001131 ORTHO05D000972 1.3e-08 64.3 200 28.5
TWI34G1162 Tripterygium wilfordii HOM05D001131 ORTHO05D000972 1.8e-08 63.9 198 26.3
Lsat_1_v5_gn_5_144661 Lactuca sativa HOM05D001131 ORTHO05D000972 2.3e-08 63.5 90 38.9
FAN23G1180 Fragaria x ananassa HOM05D001131 ORTHO05D000972 3.0e-08 63.2 216 27.8
FAN28G1130 Fragaria x ananassa HOM05D001131 ORTHO05D000972 3.9e-08 62.8 87 39.1
Gohir.A07G008200 Gossypium hirsutum HOM05D001131 ORTHO05D000972 3.9e-08 62.8 95 36.8
Manes.03G025900 Manihot esculenta HOM05D001131 ORTHO05D000972 3.9e-08 62.8 205 29.3
Phvul.002G309700 Phaseolus vulgaris HOM05D001131 ORTHO05D000972 5.1e-08 62.4 198 27.3
Glyma.13G355100 Glycine max HOM05D001131 ORTHO05D000972 6.7e-08 62.0 99 36.4
PSO478G1201 Papaver somniferum HOM05D001131 ORTHO05D000972 6.7e-08 62.0 83 43.4
Atru.chr7.1445 Acer truncatum HOM05D001131 ORTHO05D000972 8.7e-08 61.6 90 34.4
Dinv41661 Davidia involucrata HOM05D001131 ORTHO05D000972 8.7e-08 61.6 56 50.0
FAN26G3052 Fragaria x ananassa HOM05D001131 ORTHO05D000972 8.7e-08 61.6 90 37.8
Lsat_1_v5_gn_4_100340 Lactuca sativa HOM05D001131 ORTHO05D000972 8.7e-08 61.6 110 31.8
Lj3g0001717 Lotus japonicus HOM05D001131 ORTHO05D000972 8.7e-08 61.6 101 35.6
Oeu050602.1 Olea europaea HOM05D001131 ORTHO05D000972 8.7e-08 61.6 86 39.5
CANSAT56G1329 Cannabis sativa HOM05D001131 ORTHO05D000972 1.1e-07 61.2 99 36.4
MELO3C024444.2 Cucumis melo HOM05D001131 ORTHO05D000972 1.1e-07 61.2 210 33.3
Oeu017829.1 Olea europaea HOM05D001131 ORTHO05D000972 1.1e-07 61.2 83 36.1
PSO017G4821 Papaver somniferum HOM05D001131 ORTHO05D000972 1.1e-07 61.2 83 43.4
Actinidia21705 Actinidia chinensis HOM05D001131 ORTHO05D000972 1.5e-07 60.8 104 31.7
Cfa003656 Carpinus fangiana HOM05D001131 ORTHO05D000972 1.5e-07 60.8 189 28.0
CsaV3_7G035360 Cucumis sativus L. HOM05D001131 ORTHO05D000972 1.5e-07 60.8 101 38.6
COL.COLO4_34765 Corchorus olitorius HOM05D001131 ORTHO05D000972 3.3e-07 59.7 92 38.0
FAN26G1487 Fragaria x ananassa HOM05D001131 ORTHO05D000972 3.3e-07 59.7 90 36.7
Psat5g296640 Pisum sativum HOM05D001131 ORTHO05D000972 3.3e-07 59.7 93 37.6
QL05p020368 Quercus lobata HOM05D001131 ORTHO05D000972 3.3e-07 59.7 191 30.4
VMungo0251G3636 Vigna mungo HOM05D001131 ORTHO05D000972 4.3e-07 59.3 199 26.1
Haze_15838 Corylus avellana HOM05D001131 ORTHO05D000972 5.7e-07 58.9 195 26.2
Phvul.005G166700 Phaseolus vulgaris HOM05D001131 ORTHO05D000972 5.7e-07 58.9 195 25.6
Rhsim08G0226800 Rhododendron simsii HOM05D001131 ORTHO05D000972 5.7e-07 58.9 85 38.8
TWI12G1427 Tripterygium wilfordii HOM05D001131 ORTHO05D000972 5.7e-07 58.9 194 27.3
CAN.G1349.1 Capsicum annuum HOM05D001131 ORTHO05D000972 7.4e-07 58.5 104 34.6
Ca_01160_v3 Cicer arietinum L. HOM05D001131 ORTHO05D000972 7.4e-07 58.5 92 39.1
AUR62022194 Chenopodium quinoa HOM05D001131 ORTHO05D000972 9.6e-07 58.2 98 39.8
DCAR_023076 Daucus carota HOM05D001131 ORTHO05D000972 9.6e-07 58.2 194 27.3
HanXRQChr10g0318331 Helianthus annuus HOM05D001131 ORTHO05D000972 9.6e-07 58.2 209 25.4
Oeu026797.1 Olea europaea HOM05D001131 ORTHO05D000972 9.6e-07 58.2 87 39.1
EL10Ac9g22091 Beta vulgaris HOM05D001131 ORTHO05D000972 1.3e-06 57.8 99 39.4
Lsat_1_v5_gn_1_37041 Lactuca sativa HOM05D001131 ORTHO05D000972 1.3e-06 57.8 103 35.0
TPR.G35013 Trifolium pratense HOM05D001131 ORTHO05D000972 1.3e-06 57.8 99 36.4
CiPaw.02G146200 Carya illinoinensis HOM05D001131 ORTHO05D000972 1.6e-06 57.4 101 34.7
Glyma.08G034400 Glycine max HOM05D001131 ORTHO05D000972 1.6e-06 57.4 91 36.3
Medtr8g102660 Medicago truncatula HOM05D001131 ORTHO05D000972 1.6e-06 57.4 103 35.0
ClCG09G000120 Citrullus lanatus HOM05D001131 ORTHO05D000972 2.1e-06 57.0 210 25.7
Cc04_g02660 Coffea canephora HOM05D001131 ORTHO05D000972 2.1e-06 57.0 97 37.1
Psat7g016000 Pisum sativum HOM05D001131 ORTHO05D000972 2.1e-06 57.0 95 41.1
Potri.014G139900 Populus trichocarpa HOM05D001131 ORTHO05D000972 2.1e-06 57.0 82 39.0
Sed0005685 Sechium edule HOM05D001131 ORTHO05D000972 2.1e-06 57.0 90 35.6
Hma1.2p1_0430F.1_g151480 Hydrangea macrophylla HOM05D001131 ORTHO05D000972 2.8e-06 56.6 109 30.3
Lj3g0011894 Lotus japonicus HOM05D001131 ORTHO05D000972 2.8e-06 56.6 196 28.1
Glyma.07G016300 Glycine max HOM05D001131 ORTHO05D000972 3.7e-06 56.2 102 37.3
TPR.G31655 Trifolium pratense HOM05D001131 ORTHO05D000972 3.7e-06 56.2 84 40.5
Lj4A393T11 Lonicera japonica HOM05D001131 ORTHO05D000972 4.8e-06 55.8 76 35.5
Lj3g0000765 Lotus japonicus HOM05D001131 ORTHO05D000972 4.8e-06 55.8 196 28.1
Medtr2g101130 Medicago truncatula HOM05D001131 ORTHO05D000972 4.8e-06 55.8 100 37.0
Phvul.004G067900 Phaseolus vulgaris HOM05D001131 ORTHO05D000972 4.8e-06 55.8 87 41.4
TAR371G0961 Trochodendron aralioides HOM05D001131 ORTHO05D000972 4.8e-06 55.8 82 40.2
Dinv30445 Davidia involucrata HOM05D001131 ORTHO05D000972 6.3e-06 55.5 88 34.1
ECA232G1952 Erigeron canadensis HOM05D001131 ORTHO05D000972 6.3e-06 55.5 218 24.3
Glyma.15G019100 Glycine max HOM05D001131 ORTHO05D000972 6.3e-06 55.5 82 37.8
QL05p020373 Quercus lobata HOM05D001131 ORTHO05D000972 6.3e-06 55.5 160 29.4
SGA_v2.0_scaffold66G22540 Striga asiatica HOM05D001131 ORTHO05D000972 6.3e-06 55.5 200 27.0
Glyma.16G149600 Glycine max HOM05D001131 ORTHO05D000972 8.2e-06 55.1 84 38.1
Lj2g0027083 Lotus japonicus HOM05D001131 ORTHO05D000972 8.2e-06 55.1 205 25.9
Lalb_Chr22g0351521 Lupinus albus HOM05D001131 ORTHO05D000972 8.2e-06 55.1 91 35.2
Psat5g296800 Pisum sativum HOM05D001131 ORTHO05D000972 8.2e-06 55.1 85 38.8
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 8.2e-06 55.1 84 39.3


User provided reference genes

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