Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2445 Cannabis sativa HOM05D007899 ORTHO05D010282 4.4e-189 664.5 336 100.0
CANSAT64G2470 Cannabis sativa HOM05D007899 ORTHO05D010282 8.9e-73 278.1 279 53.4
CANSAT64G2259 Cannabis sativa HOM05D007899 ORTHO05D010282 2.4e-54 216.9 228 52.2
QL09p046424 Quercus lobata HOM05D007899 ORTHO05D010282 1.5e-27 127.9 243 34.2
QL04p028890 Quercus lobata HOM05D000007 ORTHO05D000521 4.8e-26 122.9 241 34.0
QL04p029020 Quercus lobata HOM05D007899 ORTHO05D010282 4.8e-26 122.9 243 33.3
TAR362G0732 Trochodendron aralioides HOM05D007899 ORTHO05D010282 1.7e-23 114.4 240 33.3
Hma1.2p1_1765F.1_g301420 Hydrangea macrophylla HOM05D007899 ORTHO05D010282 1.1e-22 111.7 178 38.2
Hma1.2p1_0542F.1_g175100 Hydrangea macrophylla HOM05D007899 ORTHO05D010282 3.2e-22 110.2 178 37.6
Peaxi162Scf01343g00111 Petunia axillaris HOM05D007899 ORTHO05D015563 6.1e-21 105.9 239 30.5
Peaxi162Scf00231g00011 Petunia axillaris HOM05D007899 ORTHO05D015563 3.3e-19 100.1 233 32.6
Aqoxy5G02752 Aquilegia oxysepala HOM05D007899 ORTHO05D010282 5.7e-19 99.4 254 30.3
Nitab4.5_0000507g0100 Nicotiana tabacum HOM05D007899 ORTHO05D015563 1.3e-18 98.2 283 28.3
Eucgr.F04328 Eucalyptus grandis HOM05D007899 ORTHO05D010282 4.8e-18 96.3 148 38.5
Aqoxy2G02572 Aquilegia oxysepala HOM05D007899 ORTHO05D010282 2.4e-17 94.0 265 28.3
Peaxi162Scf01343g00160 Petunia axillaris HOM05D007899 ORTHO05D015563 2.4e-17 94.0 225 30.7
Aqoxy2G02890 Aquilegia oxysepala HOM05D007899 ORTHO05D010282 5.3e-17 92.8 261 27.2
Gohir.A12G121800 Gossypium hirsutum HOM05D007899 ORTHO05D010282 3.8e-15 86.7 261 27.2
Gohir.D12G125400 Gossypium hirsutum HOM05D007899 ORTHO05D010282 3.8e-15 86.7 250 27.6
Gorai.008G136400 Gossypium raimondii HOM05D007899 ORTHO05D010282 5.0e-15 86.3 261 26.4
Actinidia25051 Actinidia chinensis HOM05D007899 ORTHO05D010282 6.5e-15 85.9 213 27.7
Aqoxy2G02614 Aquilegia oxysepala HOM05D007899 ORTHO05D010282 6.5e-15 85.9 293 26.3
Aqoxy5G00677 Aquilegia oxysepala HOM05D007899 ORTHO05D010282 1.5e-14 84.7 238 26.9
PGSC0003DMG400046176 Solanum tuberosum HOM05D007899 ORTHO05D015563 1.5e-14 84.7 175 31.4
Thecc.01G321600 Theobroma cacao HOM05D007899 ORTHO05D010282 2.5e-14 84.0 248 26.2
Nitab4.5_0004218g0020 Nicotiana tabacum HOM05D007899 ORTHO05D010282 3.2e-14 83.6 248 25.8
arahy.Tifrunner.gnm1.ann1.D5DV9J Arachis hypogaea HOM05D007899 ORTHO05D010282 9.4e-14 82.0 223 26.0
arahy.Tifrunner.gnm1.ann1.GC5N30 Arachis hypogaea HOM05D007899 ORTHO05D010282 3.6e-13 80.1 223 25.1
Peaxi162Scf00919g00048 Petunia axillaris HOM05D007899 ORTHO05D010282 3.6e-13 80.1 276 23.9
arahy.Tifrunner.gnm1.ann1.RIPR8S Arachis hypogaea HOM05D007899 ORTHO05D010282 4.7e-13 79.7 223 25.1
Nitab4.5_0000222g0210 Nicotiana tabacum HOM05D007899 ORTHO05D010282 6.1e-13 79.3 248 26.6
Lalb_Chr07g0184251 Lupinus albus HOM05D007899 ORTHO05D010282 1.0e-12 78.6 260 24.6
RcHm_v2.0_Chr5g0034421 Rosa chinensis HOM05D007899 ORTHO05D010282 1.4e-12 78.2 196 28.1
MBI03_g28537_MAGBIO Magnolia biondii HOM05D000886 ORTHO05D000525 3.9e-12 76.6 239 27.2
RcHm_v2.0_Chr5g0034401 Rosa chinensis HOM05D007899 ORTHO05D010282 3.9e-12 76.6 262 25.2
Peaxi162Scf00919g00022 Petunia axillaris HOM05D007899 ORTHO05D010282 1.5e-11 74.7 259 25.5
arahy.Tifrunner.gnm1.ann1.4H8HXV Arachis hypogaea HOM05D007899 ORTHO05D010282 2.0e-11 74.3 190 26.8
Nitab4.5_0003694g0040 Nicotiana tabacum HOM05D000886 ORTHO05D000525 2.0e-11 74.3 170 30.6
Potri.002G185500 Populus trichocarpa HOM05D007899 ORTHO05D010282 2.0e-11 74.3 248 24.2
Dinv03445 Davidia involucrata HOM05D000886 ORTHO05D000525 3.7e-10 70.1 233 27.0
FvH4_3g20500 Fragaria vesca HOM05D007899 ORTHO05D010282 3.7e-10 70.1 270 24.1
Peaxi162Scf00102g00087 Petunia axillaris HOM05D000886 ORTHO05D000525 3.7e-10 70.1 190 26.3
PGSC0003DMG400005212 Solanum tuberosum HOM05D007899 ORTHO05D010282 3.7e-10 70.1 234 26.1
Nitab4.5_0003544g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 6.3e-10 69.3 238 26.5
Sopen01g029960 Solanum pennellii HOM05D007899 ORTHO05D010282 6.3e-10 69.3 192 27.1
Dinv17692 Davidia involucrata HOM05D000886 ORTHO05D000525 8.2e-10 68.9 167 28.7
Lj2A411T32 Lonicera japonica HOM05D000886 ORTHO05D000525 8.2e-10 68.9 221 28.5
Nitab4.5_0002646g0050 Nicotiana tabacum HOM05D007899 ORTHO05D015563 8.2e-10 68.9 187 31.0
Solyc01g068040.1 Solanum lycopersicum HOM05D007899 ORTHO05D010282 8.2e-10 68.9 192 27.1
Sopen10g028880 Solanum pennellii HOM05D000886 ORTHO05D000525 1.1e-09 68.6 221 26.7
Cc06_g20650 Coffea canephora HOM05D000886 ORTHO05D000525 1.8e-09 67.8 274 23.0
Atru.chr1.1367 Acer truncatum HOM05D000886 ORTHO05D000525 2.4e-09 67.4 221 25.3
CDE12G0818 Ceratophyllum demersum HOM05D000886 ORTHO05D000525 3.1e-09 67.0 245 27.8
Ca_09165_v3 Cicer arietinum L. HOM05D000886 ORTHO05D000525 4.1e-09 66.6 184 29.9
ECA232G4885 Erigeron canadensis HOM05D000886 ORTHO05D000525 4.1e-09 66.6 182 28.6
Migut.N00797 Erythranthe guttata HOM05D000886 ORTHO05D000525 4.1e-09 66.6 187 26.2
HanXRQChr09g0238531 Helianthus annuus HOM05D000886 ORTHO05D000525 4.1e-09 66.6 183 28.4
Lalb_Chr03g0042881 Lupinus albus HOM05D000886 ORTHO05D000525 4.1e-09 66.6 237 26.2
Nitab4.5_0004382g0010 Nicotiana tabacum HOM05D000886 ORTHO05D000525 4.1e-09 66.6 182 26.4
Oeu060772.1 Olea europaea HOM05D000886 ORTHO05D000525 4.1e-09 66.6 225 25.3
CANSAT56G3317 Cannabis sativa HOM05D000886 ORTHO05D000525 5.3e-09 66.2 236 25.4
Migut.J00957 Erythranthe guttata HOM05D000886 ORTHO05D000525 5.3e-09 66.2 238 25.2
Manes.08G161704 Manihot esculenta HOM05D000886 ORTHO05D000525 5.3e-09 66.2 239 26.4
Nitab4.5_0004310g0010 Nicotiana tabacum HOM05D000886 ORTHO05D000525 5.3e-09 66.2 182 25.8
Nitab4.5_0000699g0130 Nicotiana tabacum HOM05D000886 ORTHO05D000525 7.0e-09 65.9 238 25.6
PGSC0003DMG400029410 Solanum tuberosum HOM05D000886 ORTHO05D000525 7.0e-09 65.9 259 26.3
Nn7g36495 Nelumbo nucifera HOM05D000886 ORTHO05D000525 9.1e-09 65.5 235 24.7
TWI53G1169 Tripterygium wilfordii HOM05D000886 ORTHO05D000525 9.1e-09 65.5 234 24.8
ECA232G0479 Erigeron canadensis HOM05D000886 ORTHO05D000525 1.2e-08 65.1 174 26.4
Sed0018455 Sechium edule HOM05D000886 ORTHO05D000525 1.6e-08 64.7 190 29.5
Os04g0225100 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 2.0e-08 64.3 173 28.3
Psat3g135440 Pisum sativum HOM05D000886 ORTHO05D000525 2.0e-08 64.3 176 27.8
Rhsim04G0117500 Rhododendron simsii HOM05D000886 ORTHO05D000525 2.0e-08 64.3 184 27.7
Solyc10g078200.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 4.5e-08 63.2 225 26.2
Eucgr.F03830 Eucalyptus grandis HOM05D007899 ORTHO05D010282 5.9e-08 62.8 161 28.0
Rhsim04G0117600 Rhododendron simsii HOM05D000886 ORTHO05D000525 5.9e-08 62.8 181 27.1
CAN.G100.25 Capsicum annuum HOM05D007899 ORTHO05D010282 7.7e-08 62.4 278 23.0
Oeu064751.1 Olea europaea HOM05D000886 ORTHO05D000525 7.7e-08 62.4 221 26.7
Haze_20280 Corylus avellana HOM05D000886 ORTHO05D000525 1.0e-07 62.0 168 29.2
Haze_20285 Corylus avellana HOM05D000886 ORTHO05D000525 1.0e-07 62.0 168 29.2
Glyma.18G194400 Glycine max HOM05D000886 ORTHO05D000525 1.0e-07 62.0 175 28.0
Sc25g0005550 Simmondsia chinensis HOM05D000886 ORTHO05D000525 1.0e-07 62.0 119 34.5
Sopen12g031440 Solanum pennellii HOM05D000886 ORTHO05D000525 1.0e-07 62.0 226 27.4
Migut.G00763 Erythranthe guttata HOM05D000886 ORTHO05D000525 1.3e-07 61.6 236 25.4
PGSC0003DMG400043401 Solanum tuberosum HOM05D000886 ORTHO05D000525 1.3e-07 61.6 221 25.8
Atru.chr1.1368 Acer truncatum HOM05D000886 ORTHO05D000525 1.7e-07 61.2 219 24.7
MELO3C009746.2 Cucumis melo HOM05D000886 ORTHO05D000525 1.7e-07 61.2 172 27.9
Dinv04815 Davidia involucrata HOM05D000886 ORTHO05D000525 1.7e-07 61.2 174 30.5
Hma1.2p1_0662F.1_g198230 Hydrangea macrophylla HOM05D000886 ORTHO05D000525 1.7e-07 61.2 236 25.8
Nitab4.5_0000642g0270 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.7e-07 61.2 172 27.9
FAN11G1061 Fragaria x ananassa HOM05D007899 ORTHO05D010282 2.2e-07 60.8 272 23.2
FAN25G2466 Fragaria x ananassa HOM05D007899 ORTHO05D010282 2.2e-07 60.8 272 23.2
Nitab4.5_0000712g0220 Nicotiana tabacum HOM05D000886 ORTHO05D000525 2.2e-07 60.8 188 26.6
ATR0693G315 Amborella trichopoda HOM05D000886 ORTHO05D000525 2.9e-07 60.5 241 25.3
Rhsim04G0069900 Rhododendron simsii HOM05D000886 ORTHO05D000525 2.9e-07 60.5 134 31.3
Sopen12g021370 Solanum pennellii HOM05D000886 ORTHO05D000525 2.9e-07 60.5 176 31.2
Zm00001eb359560 Zea mays HOM05D000886 ORTHO05D000525 2.9e-07 60.5 176 26.7
Aqoxy2G02676 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 3.8e-07 60.1 233 23.6
CsaV3_3G040060 Cucumis sativus L. HOM05D000886 ORTHO05D000525 3.8e-07 60.1 172 27.3
Nitab4.5_0000312g0010 Nicotiana tabacum HOM05D000886 ORTHO05D000525 3.8e-07 60.1 223 23.3
Peaxi162Scf00975g00016 Petunia axillaris HOM05D000886 ORTHO05D000525 3.8e-07 60.1 92 37.0
CsaV3_3G040030 Cucumis sativus L. HOM05D000886 ORTHO05D000525 5.0e-07 59.7 118 32.2
Migut.E01039 Erythranthe guttata HOM05D000886 ORTHO05D000525 5.0e-07 59.7 206 28.2
Migut.E01040 Erythranthe guttata HOM05D000886 ORTHO05D000525 5.0e-07 59.7 206 28.2
Hma1.2p1_1283F.1_g272790 Hydrangea macrophylla HOM05D000886 ORTHO05D000525 5.0e-07 59.7 232 24.6
Solyc12g094540.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 5.0e-07 59.7 224 26.8
VMungo0647G0937 Vigna mungo HOM05D000886 ORTHO05D000525 5.0e-07 59.7 198 28.3
Migut.O00481 Erythranthe guttata HOM05D000886 ORTHO05D000525 6.5e-07 59.3 206 27.2
Migut.O00662 Erythranthe guttata HOM05D000886 ORTHO05D000525 6.5e-07 59.3 206 27.2
Oeu064753.1 Olea europaea HOM05D000886 ORTHO05D000525 6.5e-07 59.3 233 24.0
Potri.016G028700 Populus trichocarpa HOM05D000886 ORTHO05D000525 6.5e-07 59.3 234 23.9
SEGI_23564 Sequoiadendron giganteum HOM05D000886 ORTHO05D000525 6.5e-07 59.3 176 31.2
Solyc12g042390.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 6.5e-07 59.3 176 30.7
CAN.G809.12 Capsicum annuum HOM05D000886 ORTHO05D000525 8.5e-07 58.9 219 26.0
Dinv12028 Davidia involucrata HOM05D000886 ORTHO05D000525 8.5e-07 58.9 195 27.2
ClCG10G016290 Citrullus lanatus HOM05D000886 ORTHO05D000525 1.1e-06 58.5 172 27.9
ClCG10G016300 Citrullus lanatus HOM05D000886 ORTHO05D000525 1.1e-06 58.5 131 30.5
Os01g0660800 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 1.1e-06 58.5 176 25.0
arahy.Tifrunner.gnm1.ann1.8PB9CU Arachis hypogaea HOM05D007899 ORTHO05D010282 1.5e-06 58.2 155 26.5
Migut.O00534 Erythranthe guttata HOM05D000886 ORTHO05D000525 1.5e-06 58.2 184 27.7
Migut.O00604 Erythranthe guttata HOM05D000886 ORTHO05D000525 1.5e-06 58.2 181 27.6
Prupe.4G179100 Prunus persica HOM05D000886 ORTHO05D000525 1.5e-06 58.2 237 25.3
CAN.G708.6 Capsicum annuum HOM05D000886 ORTHO05D000525 1.9e-06 57.8 187 24.1
CDE12G0614 Ceratophyllum demersum HOM05D000886 ORTHO05D000525 1.9e-06 57.8 156 28.8
Ciclev10006543m.g Citrus clementina HOM05D000886 ORTHO05D000525 1.9e-06 57.8 177 24.3
Ciclev10012747m.g Citrus clementina HOM05D000886 ORTHO05D000525 1.9e-06 57.8 137 28.5
Migut.E01003 Erythranthe guttata HOM05D000886 ORTHO05D000525 1.9e-06 57.8 184 29.9
Os01g0737700 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 1.9e-06 57.8 147 27.2
Phvul.008G111200 Phaseolus vulgaris HOM05D000886 ORTHO05D000525 1.9e-06 57.8 182 28.6
SGA_v2.0_scaffold240G44131 Striga asiatica HOM05D000886 ORTHO05D000525 1.9e-06 57.8 242 25.6
TPR.G1581 Trifolium pratense HOM05D000886 ORTHO05D000525 1.9e-06 57.8 176 27.3
Ca_09162_v3 Cicer arietinum L. HOM05D000886 ORTHO05D000525 2.5e-06 57.4 100 34.0
Peaxi162Scf00069g00011 Petunia axillaris HOM05D000886 ORTHO05D000525 2.5e-06 57.4 173 28.9
Actinidia30468 Actinidia chinensis HOM05D000886 ORTHO05D000525 3.2e-06 57.0 145 27.6
CsaV3_3G040040 Cucumis sativus L. HOM05D000886 ORTHO05D000525 3.2e-06 57.0 171 29.8
Migut.E01697 Erythranthe guttata HOM05D000886 ORTHO05D000525 3.2e-06 57.0 206 28.6
PSO781G0239 Papaver somniferum HOM05D000886 ORTHO05D000525 3.2e-06 57.0 280 22.9
SalBow6G0974 Salvia bowleyana HOM05D000886 ORTHO05D000525 3.2e-06 57.0 241 27.0
GSVIVG01025807001 Vitis vinifera HOM05D000886 ORTHO05D000525 3.2e-06 57.0 230 23.9
Eucgr.J00899 Eucalyptus grandis HOM05D000886 ORTHO05D000525 4.2e-06 56.6 146 30.1
Nitab4.5_0014313g0010 Nicotiana tabacum HOM05D000886 ORTHO05D000525 4.2e-06 56.6 223 22.9
PSO017G0537 Papaver somniferum HOM05D000886 ORTHO05D000525 4.2e-06 56.6 136 27.9
Peaxi162Scf00975g10015 Petunia axillaris HOM05D000886 ORTHO05D000525 4.2e-06 56.6 95 32.6
Migut.E01004 Erythranthe guttata HOM05D000886 ORTHO05D000525 5.5e-06 56.2 184 29.3
Migut.E01005 Erythranthe guttata HOM05D000886 ORTHO05D000525 5.5e-06 56.2 184 29.3
Eucgr.D02522 Eucalyptus grandis HOM05D000886 ORTHO05D000525 5.5e-06 56.2 172 25.0
Nitab4.5_0011877g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 5.5e-06 56.2 205 23.9
Nitab4.5_0005169g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 7.2e-06 55.8 216 25.5
Prupe.4G185000 Prunus persica HOM05D007899 ORTHO05D010282 7.2e-06 55.8 189 24.3
Gohir.D07G133800 Gossypium hirsutum HOM05D000886 ORTHO05D000525 9.4e-06 55.5 178 23.0
Lsat_1_v5_gn_9_55760 Lactuca sativa HOM05D000886 ORTHO05D000525 9.4e-06 55.5 180 26.7
Nitab4.5_0000296g0050 Nicotiana tabacum HOM05D000886 ORTHO05D000525 9.4e-06 55.5 174 24.7
Nitab4.5_0006171g0080 Nicotiana tabacum HOM05D000886 ORTHO05D000525 9.4e-06 55.5 245 24.5
Peaxi162Scf00001g00142 Petunia axillaris HOM05D000909 ORTHO05D010573 9.4e-06 55.5 164 28.0


User provided reference genes

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