Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 8.3e-111 403.7 197 100.0
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 1.1e-73 280.4 186 74.2
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 2.4e-73 279.3 190 68.9
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 2.4e-73 279.3 188 68.6
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 4.0e-73 278.5 183 71.0
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 6.8e-73 277.7 193 66.8
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 6.8e-73 277.7 185 70.8
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 6.8e-73 277.7 188 69.7
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 8.9e-73 277.3 185 70.8
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 1.5e-72 276.6 197 68.5
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 3.4e-72 275.4 196 67.9
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 3.4e-72 275.4 190 67.9
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 4.4e-72 275.0 198 66.7
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 5.8e-72 274.6 197 66.5
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 5.8e-72 274.6 192 66.7
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 5.8e-72 274.6 183 67.2
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 7.6e-72 274.2 198 68.2
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 9.9e-72 273.9 194 69.6
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 1.7e-71 273.1 197 66.5
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 2.9e-71 272.3 196 66.8
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 6.4e-71 271.2 192 67.2
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 3.2e-70 268.9 190 69.5
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 7.1e-70 267.7 197 62.4
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 7.1e-70 267.7 192 65.1
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 9.3e-70 267.3 187 68.4
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 9.3e-70 267.3 183 71.6
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 2.1e-69 266.2 166 72.9
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 2.1e-69 266.2 197 64.0
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 2.7e-69 265.8 195 64.1
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 2.7e-69 265.8 198 65.7
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 3.5e-69 265.4 181 71.3
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 4.6e-69 265.0 195 63.6
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 4.6e-69 265.0 193 65.3
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 4.6e-69 265.0 190 65.3
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 1.0e-68 263.8 179 69.8
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 1.3e-68 263.5 195 65.1
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 2.3e-68 262.7 183 66.1
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 3.0e-68 262.3 180 72.2
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 3.9e-68 261.9 187 66.3
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 8.7e-68 260.8 191 67.0
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 1.1e-67 260.4 187 65.8
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.3e-67 258.8 191 66.5
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 4.3e-67 258.5 193 64.8
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 4.3e-67 258.5 190 63.7
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 7.3e-67 257.7 183 64.5
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 7.3e-67 257.7 183 64.5
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 9.6e-67 257.3 187 65.2
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 2.1e-66 256.1 189 67.2
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 3.6e-66 255.4 191 65.4
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 3.6e-66 255.4 190 64.2
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 4.8e-66 255.0 187 64.7
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 6.2e-66 254.6 191 66.5
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 6.2e-66 254.6 187 66.3
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 8.1e-66 254.2 187 63.6
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 8.1e-66 254.2 174 65.5
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.4e-65 253.4 186 65.1
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 1.8e-65 253.1 183 69.4
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 2.4e-65 252.7 187 64.2
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.4e-65 252.7 186 64.0
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 4.0e-65 251.9 197 59.9
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 1.2e-64 250.4 176 64.2
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 2.0e-64 249.6 193 60.6
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 2.6e-64 249.2 183 62.3
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 2.6e-64 249.2 201 62.7
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 3.4e-64 248.8 183 62.8
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.4e-64 248.8 175 66.3
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 4.4e-64 248.4 183 62.8
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 4.4e-64 248.4 199 62.8
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 5.8e-64 248.1 181 68.0
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 5.8e-64 248.1 170 67.6
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 7.6e-64 247.7 183 62.8
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 7.6e-64 247.7 196 57.7
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 9.9e-64 247.3 170 67.1
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 1.3e-63 246.9 180 66.1
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 1.7e-63 246.5 196 58.2
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 2.2e-63 246.1 161 67.1
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 2.2e-63 246.1 196 58.2
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 3.8e-63 245.4 199 57.3
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 4.9e-63 245.0 183 62.3
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 4.9e-63 245.0 188 61.2
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 1.4e-62 243.4 196 56.6
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 1.4e-62 243.4 196 56.6
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 1.4e-62 243.4 175 66.3
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 2.4e-62 242.7 183 64.5
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 4.2e-62 241.9 183 60.7
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 5.4e-62 241.5 198 58.6
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 9.3e-62 240.7 183 61.7
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 1.6e-61 240.0 197 57.4
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 2.7e-61 239.2 149 70.5
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 4.6e-61 238.4 183 61.7
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 6.0e-61 238.0 181 60.2
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 1.0e-60 237.3 207 57.5
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 1.7e-60 236.5 153 68.0
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 3.9e-60 235.3 156 69.2
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 5.1e-60 235.0 178 61.2
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 6.6e-60 234.6 189 60.8
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.1e-59 233.8 175 64.0
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 1.9e-59 233.0 197 56.9
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 3.3e-59 232.3 188 59.0
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 2.1e-58 229.6 149 67.8
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 3.6e-58 228.8 149 66.4
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 8.1e-58 227.6 183 60.7
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 8.1e-58 227.6 149 66.4
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 2.4e-54 216.1 179 55.3
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 2.1e-53 213.0 151 63.6
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 2.3e-52 209.5 156 67.3
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 2.8e-50 202.6 195 50.3
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 1.1e-49 200.7 164 57.9
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 1.3e-47 193.7 189 52.9
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 5.5e-46 188.3 199 46.7
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 6.0e-45 184.9 194 47.9
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 7.9e-45 184.5 196 46.9
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.4e-41 172.9 158 48.7
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.4e-41 172.9 158 48.7
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 9.0e-41 171.0 119 71.4
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 5.0e-39 165.2 150 49.3
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 1.4e-38 163.7 125 63.2
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 3.5e-37 159.1 126 61.9
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 3.5e-37 159.1 93 75.3
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 1.0e-36 157.5 125 60.8
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.3e-36 157.1 102 70.6
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 7.9e-29 131.3 132 53.0
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 3.3e-27 125.9 157 39.5
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 1.8e-25 120.2 70 77.1
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 4.5e-24 115.5 74 71.6
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 2.2e-23 113.2 71 71.8
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 3.6e-21 105.9 67 71.6
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 6.1e-21 105.1 82 54.9
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 6.7e-20 101.7 145 36.6
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 5.7e-19 98.6 67 62.7
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 3.5e-16 89.4 92 45.7
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 3.2e-14 82.8 144 29.2
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 3.9e-12 75.9 73 52.1
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 5.2e-12 75.5 74 52.7
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 8.8e-12 74.7 45 68.9
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 2.0e-11 73.6 143 26.6


User provided reference genes

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