Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2317 Cannabis sativa HOM05D007107 ORTHO05D009198 1.3e-50 203.0 120 100.0
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 6.3e-13 77.8 87 50.6
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.8e-12 76.3 107 42.1
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.8e-12 76.3 122 39.3
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 1.8e-12 76.3 122 39.3
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 4.1e-12 75.1 111 41.4
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 9.1e-12 73.9 118 43.2
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 2.0e-11 72.8 119 39.5
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 3.5e-11 72.0 69 56.5
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 4.5e-11 71.6 92 48.9
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 4.5e-11 71.6 104 45.2
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 7.7e-11 70.9 119 40.3
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 7.7e-11 70.9 109 41.3
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 7.7e-11 70.9 116 43.1
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 1.7e-10 69.7 77 51.9
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 1.7e-10 69.7 69 55.1
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 2.3e-10 69.3 77 51.9
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 5.0e-10 68.2 105 41.0
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 6.6e-10 67.8 75 52.0
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 6.6e-10 67.8 75 52.0
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 8.6e-10 67.4 121 38.8
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 8.6e-10 67.4 78 51.3
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 8.6e-10 67.4 78 51.3
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 1.5e-09 66.6 81 48.1
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 2.5e-09 65.9 88 48.9
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 2.5e-09 65.9 81 46.9
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 2.5e-09 65.9 104 45.2
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 3.3e-09 65.5 75 50.7
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 4.2e-09 65.1 69 50.7
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 4.2e-09 65.1 85 47.1
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 7.2e-09 64.3 81 46.9
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 9.5e-09 63.9 89 47.2
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 9.5e-09 63.9 109 37.6
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 9.5e-09 63.9 73 47.9
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 9.5e-09 63.9 109 37.6
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 9.5e-09 63.9 69 50.7
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 9.5e-09 63.9 104 41.3
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 9.5e-09 63.9 69 49.3
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 9.5e-09 63.9 69 52.2
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 1.2e-08 63.5 90 45.6
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 3.6e-08 62.0 107 39.3
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 4.7e-08 61.6 69 49.3
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 6.1e-08 61.2 69 52.2
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 6.1e-08 61.2 69 52.2
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 6.1e-08 61.2 121 36.4
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 6.1e-08 61.2 98 41.8
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 6.1e-08 61.2 106 37.7
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 8.0e-08 60.8 69 49.3
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 8.0e-08 60.8 70 50.0
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 1.4e-07 60.1 69 52.2
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 1.4e-07 60.1 75 50.7
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 1.8e-07 59.7 69 50.7
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 1.8e-07 59.7 70 50.0
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 4.0e-07 58.5 71 49.3
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 4.0e-07 58.5 78 42.3
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 5.2e-07 58.2 59 52.5
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 5.2e-07 58.2 102 41.2
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 6.8e-07 57.8 69 50.7
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 6.8e-07 57.8 79 44.3
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 8.9e-07 57.4 66 47.0
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 8.9e-07 57.4 70 47.1
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 8.9e-07 57.4 92 42.4
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 1.5e-06 56.6 74 45.9
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 1.5e-06 56.6 74 45.9
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 1.5e-06 56.6 74 45.9
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 1.5e-06 56.6 74 44.6
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 2.0e-06 56.2 75 44.0
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 2.0e-06 56.2 75 44.0
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 3.4e-06 55.5 93 39.8
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 3.4e-06 55.5 69 47.8
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 7.5e-06 54.3 80 43.8
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 7.5e-06 54.3 75 44.0
A01p35080 Brassica napus HOM05D007107 ORTHO05D009198 7.5e-06 54.3 72 44.4
BraA01t03589Z Brassica rapa HOM05D007107 ORTHO05D009198 7.5e-06 54.3 72 44.4


User provided reference genes

Program Settings