Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 6.8e-185 650.6 347 100.0
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 3.8e-159 565.1 347 86.5
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 4.9e-159 564.7 347 85.9
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.4e-158 563.1 347 86.5
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 1.8e-156 556.2 347 84.1
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 6.7e-156 554.3 347 85.0
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 7.4e-155 550.8 347 84.7
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 9.6e-155 550.4 346 84.4
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 2.1e-154 549.3 347 84.7
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 6.2e-154 547.7 347 84.1
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 8.2e-154 547.4 347 82.7
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.1e-153 547.0 347 81.8
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.1e-153 547.0 347 83.6
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 1.4e-153 546.6 347 82.7
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.4e-153 545.8 347 81.6
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 6.9e-153 544.3 347 84.1
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 2.0e-152 542.7 347 82.1
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 2.0e-152 542.7 347 81.8
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.6e-152 542.3 347 82.4
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.6e-152 542.3 347 82.4
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.5e-152 541.6 347 81.3
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 5.8e-152 541.2 347 81.6
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.7e-151 539.7 347 81.3
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 2.9e-151 538.9 347 82.7
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 3.8e-151 538.5 348 81.3
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.1e-150 537.0 347 81.8
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 1.4e-150 536.6 347 81.8
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 6.0e-149 531.2 347 80.7
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 1.0e-148 530.4 347 81.6
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.3e-148 529.3 347 78.4
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 3.0e-148 528.9 345 80.0
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 6.7e-148 527.7 345 79.4
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 8.7e-148 527.3 345 79.4
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 1.1e-147 526.9 345 78.8
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 1.5e-147 526.6 341 79.8
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.5e-147 526.6 347 82.1
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 1.5e-147 526.6 347 79.0
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 1.9e-147 526.2 345 78.8
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 5.7e-147 524.6 345 79.4
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 9.7e-147 523.9 347 78.7
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 1.3e-146 523.5 347 79.3
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 2.8e-146 522.3 349 80.2
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 3.7e-146 521.9 347 80.1
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 4.8e-146 521.5 347 79.5
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 8.2e-146 520.8 352 79.0
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 8.2e-146 520.8 347 79.3
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 1.8e-145 519.6 347 79.0
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 2.4e-145 519.2 341 79.2
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 3.1e-145 518.8 345 78.3
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 3.1e-145 518.8 345 78.3
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 3.1e-145 518.8 347 77.5
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 5.3e-145 518.1 341 78.9
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 5.3e-145 518.1 347 79.3
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 5.3e-145 518.1 347 78.1
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 9.0e-145 517.3 345 78.0
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 9.0e-145 517.3 345 78.0
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 9.0e-145 517.3 345 78.0
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 9.0e-145 517.3 357 76.2
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 2.6e-144 515.8 341 78.3
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 2.6e-144 515.8 345 78.3
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 3.4e-144 515.4 344 77.9
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 4.5e-144 515.0 345 77.4
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 5.9e-144 514.6 341 78.0
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 5.9e-144 514.6 347 77.5
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 7.7e-144 514.2 347 76.7
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 2.2e-143 512.7 345 78.8
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 3.8e-143 511.9 343 78.7
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 8.5e-143 510.8 349 77.7
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 8.5e-143 510.8 349 77.9
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 1.1e-142 510.4 347 77.2
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 3.2e-142 508.8 357 75.1
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 3.2e-142 508.8 347 77.2
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 1.6e-141 506.5 347 75.2
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 2.1e-141 506.1 342 77.5
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 4.6e-141 505.0 347 76.1
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 1.4e-140 503.4 388 71.1
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 2.3e-140 502.7 347 76.4
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 5.1e-140 501.5 339 79.6
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 2.0e-139 499.6 343 76.4
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 3.3e-139 498.8 337 74.2
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 5.7e-139 498.0 353 75.4
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 6.3e-138 494.6 325 78.2
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 8.2e-138 494.2 360 73.1
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 1.4e-137 493.4 347 77.2
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 1.4e-137 493.4 368 72.6
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 2.0e-136 489.6 345 75.9
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 2.6e-136 489.2 272 91.2
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.4e-136 488.8 315 83.5
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.3e-135 486.9 310 84.2
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 4.2e-134 481.9 310 78.1
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.6e-133 479.9 347 75.8
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 2.1e-133 479.6 417 65.5
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 5.1e-132 474.9 337 72.4
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 7.7e-128 461.1 272 84.6
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 5.0e-127 458.4 338 73.7
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 6.5e-127 458.0 310 76.8
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 6.5e-127 458.0 345 69.0
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 4.8e-122 441.8 347 70.0
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 6.3e-122 441.4 347 69.7
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 5.9e-120 434.9 345 68.7
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 1.3e-119 433.7 296 79.4
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 2.2e-119 433.0 400 61.5
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 3.0e-116 422.5 347 66.6
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 3.7e-114 415.6 420 58.8
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.1e-113 414.1 347 65.7
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 1.6e-112 410.2 319 69.9
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 8.0e-109 397.9 222 87.8
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 8.8e-108 394.4 293 72.7
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 8.6e-103 377.9 222 85.1
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 9.5e-102 374.4 345 62.0
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 1.2e-96 357.5 386 53.1
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.1e-94 350.9 204 87.3
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 4.3e-94 349.0 347 59.1
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 4.3e-94 349.0 246 75.6
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 9.5e-86 321.2 437 49.2
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 8.0e-85 318.2 346 55.8
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 2.7e-80 303.1 329 49.8
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 1.1e-78 297.7 169 88.8
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 2.5e-78 296.6 251 65.7
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.1e-77 293.5 251 62.9
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 3.7e-74 282.7 202 74.3
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 9.9e-67 258.1 315 44.4
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 3.8e-66 256.1 255 58.4
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.1e-54 218.0 144 73.6
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 1.5e-54 217.6 144 77.1
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 2.8e-53 213.4 232 54.3
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 2.0e-51 207.2 167 70.1
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 4.5e-51 206.1 194 57.7
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 8.7e-47 191.8 186 61.8
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.9e-46 190.7 110 87.3
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 1.9e-46 190.7 350 37.4
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 3.3e-46 189.9 131 76.3
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 3.9e-39 166.4 323 34.1
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 5.1e-39 166.0 342 33.9
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 8.2e-37 158.7 134 71.6
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 4.5e-35 152.9 334 32.0
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 1.8e-31 141.0 113 68.1
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 3.4e-27 126.7 74 85.1
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 9.7e-22 108.6 95 66.3
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 1.3e-21 108.2 108 63.0
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.2e-21 107.5 97 66.0
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 1.5e-19 101.3 73 67.1
MD01G1007700 Malus domestica HOM05D005314 ORTHO05D246798 5.7e-06 56.2 38 71.1


User provided reference genes

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