Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 6.1e-194 680.6 344 100.0
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 1.1e-147 526.9 331 76.4
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 9.9e-144 513.8 321 74.5
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.7e-143 513.1 322 74.5
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 8.4e-143 510.8 312 75.3
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.1e-142 510.4 321 74.5
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 5.4e-142 508.1 325 74.2
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 7.1e-142 507.7 321 74.5
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 9.3e-142 507.3 318 75.8
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.1e-141 506.1 323 73.4
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 2.7e-141 505.8 319 75.5
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 3.5e-141 505.4 321 73.8
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 4.6e-141 505.0 323 72.8
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.6e-141 505.0 323 72.8
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 4.6e-141 505.0 335 71.0
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.5e-139 499.2 313 74.4
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.6e-139 498.0 326 71.5
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 5.6e-139 498.0 321 72.3
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 3.6e-138 495.4 321 72.3
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 3.6e-138 495.4 327 71.9
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 3.6e-138 495.4 312 73.1
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 9.0e-137 490.7 314 74.5
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.5e-136 490.0 311 72.0
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 3.4e-136 488.8 320 72.5
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 4.5e-136 488.4 328 71.6
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.1e-134 483.8 316 70.9
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 1.9e-134 483.0 330 69.4
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 2.4e-134 482.6 370 64.1
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 3.5e-133 478.8 311 70.4
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 6.0e-133 478.0 312 71.8
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 6.0e-133 478.0 315 68.3
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 1.0e-132 477.2 318 69.8
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 2.3e-132 476.1 318 69.5
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 8.7e-132 474.2 294 76.2
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.9e-131 473.0 322 70.8
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 1.9e-131 473.0 315 68.6
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.9e-131 473.0 317 70.3
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.9e-131 473.0 317 70.3
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 2.5e-131 472.6 372 62.4
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 2.5e-131 472.6 335 67.2
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 3.3e-131 472.2 323 70.3
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 4.3e-131 471.9 315 69.8
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 2.1e-130 469.5 323 70.3
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 3.7e-130 468.8 299 74.6
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 3.7e-130 468.8 338 65.4
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 3.7e-130 468.8 338 65.4
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.1e-129 467.2 317 69.1
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 3.1e-129 465.7 373 61.9
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 4.0e-129 465.3 316 68.4
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 4.0e-129 465.3 318 70.1
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 5.3e-129 464.9 318 68.2
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 5.3e-129 464.9 315 67.9
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.6e-128 462.6 316 69.0
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 2.6e-128 462.6 337 67.4
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 4.5e-128 461.8 313 68.7
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 4.5e-128 461.8 318 67.6
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.9e-126 456.4 383 58.5
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.9e-126 456.4 321 68.5
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 4.2e-126 455.3 322 66.5
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 7.1e-126 454.5 320 67.8
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 2.7e-125 452.6 318 65.7
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 4.6e-125 451.8 319 67.7
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 7.9e-125 451.1 314 68.5
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 7.9e-125 451.1 331 65.9
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.0e-124 450.7 319 67.4
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.3e-124 449.5 323 65.9
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 3.9e-124 448.7 322 67.4
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 3.9e-124 448.7 321 67.3
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 5.1e-124 448.4 319 67.1
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.1e-123 447.2 343 63.0
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 1.9e-123 446.4 312 65.7
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.9e-123 446.4 285 72.6
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 5.7e-123 444.9 320 65.9
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 7.4e-123 444.5 319 66.5
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 5.3e-121 438.3 315 66.7
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.5e-120 436.8 327 64.5
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 3.8e-119 432.2 333 64.0
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 6.5e-119 431.4 318 64.2
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 1.1e-118 430.6 309 66.7
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.1e-118 430.6 330 63.6
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 3.2e-118 429.1 298 68.5
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.2e-118 429.1 279 72.0
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 3.2e-118 429.1 315 66.7
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 7.2e-118 427.9 289 67.1
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 6.1e-117 424.9 297 66.7
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 3.3e-115 419.1 365 58.6
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.6e-114 416.8 265 72.8
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.8e-114 415.2 268 72.8
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 9.0e-113 411.0 312 62.5
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 3.4e-112 409.1 269 71.4
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.2e-111 406.4 302 63.9
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.2e-109 400.6 318 59.7
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.6e-109 400.2 260 71.5
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 1.8e-108 396.7 315 60.6
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 1.5e-107 393.7 318 60.4
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 1.5e-107 393.7 322 61.8
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 5.3e-105 385.2 248 73.0
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 5.3e-105 385.2 245 72.7
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 3.8e-103 379.0 320 59.4
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.1e-102 377.5 245 70.2
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 4.7e-101 372.1 329 60.2
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 3.9e-100 369.0 347 54.8
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.9e-100 369.0 317 57.4
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 5.1e-100 368.6 211 79.1
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 1.1e-99 367.5 320 60.6
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 1.5e-99 367.1 404 49.0
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 3.7e-98 362.5 297 61.6
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.4e-97 360.5 312 56.7
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.1e-97 359.0 321 58.9
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 9.1e-97 357.8 321 58.6
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 7.7e-96 354.8 230 70.9
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.7e-96 354.8 324 58.6
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.0e-95 354.4 314 58.6
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.2e-94 349.0 319 57.7
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 2.1e-93 346.7 338 57.7
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 3.0e-92 342.8 251 63.3
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.4e-91 339.0 317 54.3
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 6.3e-90 335.1 292 57.2
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.5e-86 323.9 384 45.1
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 6.1e-85 318.5 322 56.8
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.0e-84 317.8 283 57.2
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.1e-81 305.8 250 61.2
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 1.7e-79 300.4 278 56.1
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.6e-69 267.3 310 44.2
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.3e-66 257.7 301 45.2
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 7.0e-65 251.9 311 42.1
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.6e-64 250.8 305 44.3
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.3e-63 247.7 309 44.3
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 6.4e-58 228.8 153 68.6
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 4.1e-57 226.1 135 74.1
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.6e-56 224.2 241 51.0
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 7.3e-54 215.3 153 66.7
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.7e-50 204.1 253 41.1
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 3.7e-50 203.0 112 82.1
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.1e-49 201.4 335 39.4
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 3.2e-49 199.9 157 58.6
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.2e-48 198.0 204 46.1
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 2.7e-48 196.8 250 40.0
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.4e-44 184.5 251 42.2
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.1e-41 174.9 301 35.5
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 6.8e-36 155.6 223 39.0
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 1.1e-33 148.3 269 32.3
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 2.7e-32 143.7 88 71.6
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 1.1e-30 138.3 247 34.8
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.5e-27 127.9 305 30.2
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.4e-27 126.7 233 34.3
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 7.6e-27 125.6 393 27.7
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 3.0e-23 113.6 84 64.3
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 1.9e-22 110.9 114 42.1
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 1.9e-22 110.9 73 69.9
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 1.9e-22 110.9 73 69.9
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.3e-22 110.2 305 28.5
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 4.3e-22 109.8 73 68.5
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 9.6e-22 108.6 119 39.5
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.3e-21 108.2 302 29.5
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 2.8e-21 107.1 212 34.4
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.0e-20 102.1 153 38.6
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.7e-18 97.8 249 28.5
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 4.9e-18 96.3 328 25.6
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 7.9e-16 89.0 60 66.7
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 4.5e-11 73.2 70 47.1
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 5.8e-11 72.8 113 41.6
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.0e-10 72.0 80 47.5
COL.COLO4_33299 Corchorus olitorius HOM05D004272 ORTHO05D005020 4.3e-06 56.6 44 56.8


User provided reference genes

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