Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 8.3e-168 593.6 291 100.0
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 3.9e-165 584.7 291 98.3
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 9.9e-129 463.8 286 77.6
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 1.7e-128 463.0 291 75.9
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 6.4e-128 461.1 290 76.2
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 8.4e-128 460.7 291 75.6
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 1.1e-127 460.3 291 74.9
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 1.9e-127 459.5 289 75.1
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 4.2e-127 458.4 291 74.9
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 5.5e-127 458.0 291 74.6
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 5.5e-127 458.0 291 74.9
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.6e-126 456.4 291 76.6
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 2.1e-126 456.1 285 76.1
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 4.6e-126 454.9 289 75.1
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.0e-125 452.2 291 74.2
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 3.9e-125 451.8 291 74.6
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.1e-123 446.0 283 74.6
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 2.8e-123 445.7 292 72.9
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 2.8e-123 445.7 292 72.9
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.7e-123 445.3 289 74.0
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 8.2e-123 444.1 291 75.3
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.4e-122 443.4 291 72.9
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 1.4e-122 443.4 289 73.7
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 2.4e-122 442.6 301 72.1
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 2.4e-122 442.6 289 74.4
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 9.0e-122 440.7 291 72.2
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 9.0e-122 440.7 287 72.8
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.2e-121 440.3 291 74.6
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.2e-121 440.3 291 72.5
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.6e-121 439.1 292 72.9
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 3.4e-121 438.7 291 73.2
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 4.5e-121 438.3 287 73.9
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.8e-121 438.0 291 73.9
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.8e-121 438.0 291 73.9
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 5.8e-121 438.0 286 73.8
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 7.6e-121 437.6 291 74.2
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 7.6e-121 437.6 291 72.9
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 2.2e-120 436.0 292 74.7
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 3.8e-120 435.3 291 71.8
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 4.9e-120 434.9 291 72.9
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 4.9e-120 434.9 288 72.6
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 6.5e-120 434.5 287 72.1
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 8.4e-120 434.1 288 72.6
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.4e-119 433.3 328 66.8
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.9e-119 433.0 291 73.9
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 2.5e-119 432.6 288 72.2
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 4.2e-119 431.8 293 71.7
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 7.1e-119 431.0 289 72.7
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 7.1e-119 431.0 279 73.8
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 7.1e-119 431.0 286 73.1
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 4.6e-118 428.3 292 72.6
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 6.0e-118 427.9 287 71.8
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 7.9e-118 427.6 287 70.7
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 7.9e-118 427.6 286 72.4
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 3.0e-117 425.6 291 69.8
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 3.0e-117 425.6 291 71.8
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 3.9e-117 425.2 287 70.4
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 3.9e-117 425.2 292 71.9
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 5.1e-117 424.9 289 71.3
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 5.1e-117 424.9 287 71.4
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 6.7e-117 424.5 287 71.4
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 6.7e-117 424.5 286 72.0
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 8.7e-117 424.1 287 71.1
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.9e-116 422.9 287 71.4
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 4.3e-116 421.8 291 70.1
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 5.7e-116 421.4 287 71.1
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 5.7e-116 421.4 288 70.8
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 7.4e-116 421.0 286 70.6
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 7.4e-116 421.0 289 71.6
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 9.7e-116 420.6 284 70.1
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 9.7e-116 420.6 291 69.8
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.6e-115 419.9 286 70.6
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 2.8e-115 419.1 324 64.5
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.8e-115 419.1 286 71.0
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 4.8e-115 418.3 254 78.3
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 6.3e-115 417.9 287 71.4
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 8.2e-115 417.5 301 68.4
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 8.2e-115 417.5 291 70.8
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.1e-114 417.2 286 71.0
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 1.4e-114 416.8 285 71.6
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 1.8e-114 416.4 287 70.4
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 4.1e-114 415.2 287 70.0
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.2e-113 413.7 291 69.4
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 2.0e-113 412.9 291 70.4
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 2.0e-113 412.9 289 68.9
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 1.3e-112 410.2 303 67.7
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.9e-112 409.1 254 77.2
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 3.8e-112 408.7 284 70.1
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.4e-109 400.2 284 69.4
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 2.0e-108 396.4 286 68.2
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.3e-108 395.6 291 67.0
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 2.2e-107 392.9 243 77.8
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 4.1e-106 388.7 294 67.7
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.1e-106 388.7 288 67.7
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 9.1e-106 387.5 293 65.9
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 1.5e-105 386.7 291 66.3
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 1.0e-104 384.0 255 71.8
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.2e-104 382.9 326 60.4
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.2e-104 382.9 326 60.4
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.1e-103 380.6 288 67.0
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.9e-103 379.8 284 66.5
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 2.7e-102 375.9 260 69.6
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 3.6e-102 375.6 254 70.9
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 3.3e-100 369.0 255 70.6
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.1e-98 364.0 280 63.2
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.4e-98 362.8 232 75.4
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 3.1e-98 362.5 289 62.3
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 5.3e-98 361.7 281 61.9
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 8.0e-94 347.8 278 62.6
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.8e-93 346.7 285 61.1
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.3e-91 340.5 258 65.1
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 2.4e-90 336.3 241 68.9
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 2.0e-89 333.2 290 59.3
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 3.8e-88 328.9 284 58.5
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.1e-86 323.2 208 76.0
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 2.8e-83 312.8 283 54.4
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 6.5e-80 301.6 284 55.6
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 2.0e-76 290.0 279 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 3.4e-76 289.3 245 57.6
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 6.3e-75 285.0 228 66.2
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 2.4e-66 256.5 170 73.5
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 8.9e-61 238.0 192 63.5
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 1.3e-59 234.2 300 46.3
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 3.2e-50 203.0 263 42.6
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 5.4e-50 202.2 130 71.5
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 2.2e-43 180.3 277 37.9
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 4.6e-41 172.6 151 58.9
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.9e-40 169.5 152 62.5
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 9.6e-39 164.9 152 56.6
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 1.6e-38 164.1 151 57.0
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 2.2e-35 153.7 138 58.7
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 6.6e-32 142.1 113 58.4
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.9e-31 140.6 265 32.5
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 3.4e-28 129.8 94 67.0
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 3.8e-27 126.3 368 28.3
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 1.6e-25 120.9 170 44.1
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 7.8e-25 118.6 100 55.0
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 1.3e-24 117.9 82 67.1
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 5.6e-23 112.5 74 70.3
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 5.3e-21 105.9 87 64.4
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 4.5e-20 102.8 66 71.2
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 7.9e-17 92.0 60 73.3
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 8.7e-16 88.6 69 62.3
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.5e-15 87.8 77 58.4
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 2.5e-15 87.0 92 48.9
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 4.3e-15 86.3 88 52.3
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 4.3e-15 86.3 88 52.3
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 7.4e-15 85.5 92 50.0
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 7.4e-15 85.5 144 38.9
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 1.3e-14 84.7 109 45.0
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.6e-14 84.3 187 31.0
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.8e-13 80.9 46 73.9
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.1e-13 80.1 56 67.9
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.1e-13 80.1 46 73.9
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.1e-13 80.1 46 73.9
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 9.0e-13 78.6 122 43.4
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.5e-12 77.8 46 69.6
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 4.5e-12 76.3 215 30.7
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.7e-09 67.0 52 65.4
Actinidia34391 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.0e-08 65.1 48 62.5
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 8.2e-06 55.5 40 65.0


User provided reference genes

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