Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 5.2e-39 164.1 92 100.0
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 6.8e-23 110.5 92 71.7
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 7.5e-22 107.1 92 69.6
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.8e-21 105.1 92 69.6
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 1.8e-20 102.4 92 67.4
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 1.0e-18 96.7 92 64.1
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 1.0e-18 96.7 92 65.2
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.3e-18 96.3 83 66.3
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 2.2e-18 95.5 83 65.1
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 3.8e-18 94.7 94 62.8
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 5.0e-18 94.4 92 60.9
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 5.0e-18 94.4 92 60.9
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 6.5e-18 94.0 93 64.5
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 8.5e-18 93.6 83 67.5
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 8.5e-18 93.6 83 67.5
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 1.1e-17 93.2 93 60.2
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 1.5e-17 92.8 92 64.1
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.9e-17 92.4 83 67.5
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.9e-17 92.4 92 65.2
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 1.9e-17 92.4 94 64.9
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 2.5e-17 92.0 92 62.0
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 2.5e-17 92.0 83 65.1
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 3.2e-17 91.7 83 66.3
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 5.5e-17 90.9 83 62.7
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 5.5e-17 90.9 83 62.7
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 7.2e-17 90.5 83 66.3
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 1.2e-16 89.7 85 63.5
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 1.6e-16 89.4 83 67.5
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 2.1e-16 89.0 92 59.8
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 2.1e-16 89.0 83 65.1
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 2.8e-16 88.6 93 62.4
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 6.1e-16 87.4 83 62.7
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 8.0e-16 87.0 84 64.3
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 8.0e-16 87.0 83 66.3
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.0e-15 86.7 87 60.9
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 1.4e-15 86.3 84 64.3
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.8e-15 85.9 85 63.5
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.8e-15 85.9 90 60.0
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 8.8e-15 83.6 84 65.5
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 8.8e-15 83.6 92 58.7
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 1.5e-14 82.8 85 64.7
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 1.5e-14 82.8 84 63.1
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 2.6e-14 82.0 83 61.4
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 4.4e-14 81.3 83 62.7
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 4.4e-14 81.3 83 60.2
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 5.7e-14 80.9 85 58.8
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 7.5e-14 80.5 85 60.0
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 7.5e-14 80.5 83 60.2
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.7e-13 79.3 83 60.2
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 1.7e-13 79.3 83 57.8
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.8e-13 78.6 83 59.0
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 3.7e-13 78.2 85 57.6
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 3.7e-13 78.2 83 59.0
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 3.7e-13 78.2 84 60.7
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.7e-13 78.2 86 59.3
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 3.7e-13 78.2 83 56.6
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 3.7e-13 78.2 83 56.6
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 4.9e-13 77.8 83 56.6
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 8.3e-13 77.0 83 55.4
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 1.1e-12 76.6 83 57.8
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 1.4e-12 76.3 83 56.6
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 1.8e-12 75.9 83 57.8
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 1.8e-12 75.9 83 57.8
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 1.8e-12 75.9 83 56.6
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 1.8e-12 75.9 85 61.2
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 3.1e-12 75.1 85 58.8
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 3.1e-12 75.1 83 56.6
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 4.1e-12 74.7 83 57.8
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 4.1e-12 74.7 83 56.6
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 4.1e-12 74.7 83 56.6
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 4.1e-12 74.7 83 56.6
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 4.1e-12 74.7 83 56.6
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 4.1e-12 74.7 83 56.6
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 4.1e-12 74.7 83 56.6
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 4.1e-12 74.7 83 56.6
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 4.1e-12 74.7 84 58.3
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 5.4e-12 74.3 83 56.6
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 7.0e-12 73.9 83 60.2
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 9.2e-12 73.6 83 56.6
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 1.2e-11 73.2 109 49.5
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 1.2e-11 73.2 93 49.5
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 2.0e-11 72.4 83 57.8
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 2.7e-11 72.0 79 59.5
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 2.7e-11 72.0 83 51.8
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 3.5e-11 71.6 87 56.3
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 3.5e-11 71.6 80 57.5
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 5.9e-11 70.9 99 51.5
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 7.8e-11 70.5 52 73.1
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 1.0e-10 70.1 84 57.1
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 1.3e-10 69.7 78 59.0
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 2.9e-10 68.6 86 52.3
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 2.9e-10 68.6 81 54.3
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 2.9e-10 68.6 96 49.0
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 3.8e-10 68.2 106 46.2
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 5.0e-10 67.8 102 51.0
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 5.0e-10 67.8 101 52.5
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 6.6e-10 67.4 84 53.6
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 8.6e-10 67.0 84 52.4
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 1.5e-09 66.2 83 55.4
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 1.5e-09 66.2 111 45.9
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 2.5e-09 65.5 83 50.6
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 4.3e-09 64.7 99 47.5
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 4.3e-09 64.7 103 48.5
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 9.5e-09 63.5 40 80.0
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.2e-08 63.2 66 65.2
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 1.6e-08 62.8 83 51.8
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 8.0e-08 60.5 97 46.4
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 8.0e-08 60.5 95 51.6
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 1.4e-07 59.7 36 83.3
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 1.8e-07 59.3 87 47.1
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 1.8e-07 59.3 87 47.1
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 3.0e-07 58.5 73 50.7
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 4.0e-07 58.2 86 47.7
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 4.0e-07 58.2 86 47.7
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 4.0e-07 58.2 86 47.7
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 4.0e-07 58.2 110 41.8
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 5.2e-07 57.8 86 50.0
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 5.2e-07 57.8 52 61.5
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 5.2e-07 57.8 72 48.6
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 6.8e-07 57.4 77 48.1
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 6.8e-07 57.4 86 47.7
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 6.8e-07 57.4 92 44.6
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 6.8e-07 57.4 82 46.3
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 6.8e-07 57.4 67 52.2
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 6.8e-07 57.4 42 71.4
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 8.9e-07 57.0 97 43.3
CDE04G0461 Ceratophyllum demersum HOM05D005822 ORTHO05D007267 8.9e-07 57.0 73 53.4
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.2e-06 56.6 73 49.3
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.2e-06 56.6 73 49.3
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 1.5e-06 56.2 83 45.8
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 1.5e-06 56.2 86 50.0
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 1.5e-06 56.2 120 39.2
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.5e-06 56.2 72 48.6
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 2.0e-06 55.8 94 48.9
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 2.0e-06 55.8 80 48.8
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 2.0e-06 55.8 88 48.9
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 2.6e-06 55.5 92 47.8
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 2.6e-06 55.5 72 50.0
ATR0705G084 Amborella trichopoda HOM05D007429 ORTHO05D003505 3.4e-06 55.1 86 50.0
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 3.4e-06 55.1 86 47.7
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 3.4e-06 55.1 86 47.7
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 3.4e-06 55.1 86 47.7
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 3.4e-06 55.1 86 50.0
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 3.4e-06 55.1 88 48.9
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 4.4e-06 54.7 83 45.8
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 4.4e-06 54.7 86 44.2
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 5.7e-06 54.3 78 46.2
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 5.7e-06 54.3 82 47.6
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 5.7e-06 54.3 82 47.6
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 5.7e-06 54.3 76 48.7
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 5.7e-06 54.3 88 47.7
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 5.7e-06 54.3 85 45.9
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 5.7e-06 54.3 88 47.7
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 5.7e-06 54.3 77 46.8
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 7.5e-06 53.9 91 42.9
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 7.5e-06 53.9 65 47.7
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 9.8e-06 53.5 101 41.6
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 9.8e-06 53.5 79 48.1
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 9.8e-06 53.5 83 47.0
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 9.8e-06 53.5 82 50.0


User provided reference genes

Program Settings