Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 3.0e-252 874.8 460 100.0
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 3.0e-188 662.1 468 72.2
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 6.3e-186 654.4 461 73.5
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 5.3e-185 651.4 462 73.8
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 4.5e-184 648.3 467 71.3
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 4.5e-184 648.3 460 74.1
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 2.5e-182 642.5 461 71.8
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 9.4e-182 640.6 467 71.3
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 9.4e-182 640.6 459 71.9
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 9.4e-182 640.6 466 72.5
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.6e-181 639.8 458 72.9
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 6.1e-181 637.9 459 72.5
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 7.9e-181 637.5 471 72.0
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 1.8e-180 636.3 466 70.4
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 5.2e-180 634.8 459 72.1
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 4.4e-179 631.7 465 70.8
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 7.4e-179 630.9 462 70.1
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 7.4e-179 630.9 456 71.5
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 4.8e-178 628.2 468 70.5
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 9.1e-177 624.0 462 69.7
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 1.2e-176 623.6 466 70.2
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 1.6e-176 623.2 470 68.5
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 4.5e-176 621.7 469 69.7
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 4.5e-176 621.7 469 69.7
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 4.5e-176 621.7 491 67.2
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 2.9e-175 619.0 468 67.5
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 5.0e-175 618.2 466 69.3
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 5.7e-171 604.7 471 67.1
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 1.3e-170 603.6 462 67.7
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 2.2e-170 602.8 462 68.4
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 3.7e-170 602.1 460 68.9
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 4.8e-170 601.7 501 65.1
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.8e-169 599.7 485 65.4
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 4.1e-169 598.6 500 65.2
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 5.3e-169 598.2 461 68.1
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 2.0e-168 596.3 465 67.5
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 7.7e-168 594.3 452 69.7
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 3.8e-167 592.0 461 66.6
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 8.5e-167 590.9 465 67.7
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 8.5e-167 590.9 464 66.6
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 3.2e-166 589.0 454 67.2
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 4.2e-166 588.6 490 64.9
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 5.5e-166 588.2 465 67.3
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 5.5e-166 588.2 456 67.1
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 1.2e-165 587.0 462 66.0
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 2.1e-165 586.3 456 66.9
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 3.6e-165 585.5 469 65.5
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 6.1e-165 584.7 460 67.0
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 2.3e-164 582.8 456 66.7
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 2.3e-164 582.8 466 65.2
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 3.0e-164 582.4 462 64.7
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 4.0e-164 582.0 471 65.6
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 4.0e-164 582.0 487 64.3
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 5.2e-164 581.6 464 65.1
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 1.5e-163 580.1 463 65.7
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 3.7e-162 575.5 466 65.2
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 1.1e-161 573.9 463 64.8
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 1.4e-161 573.5 461 65.1
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 1.8e-161 573.2 466 64.6
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 1.8e-161 573.2 457 66.1
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 5.4e-161 571.6 465 66.0
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 7.0e-161 571.2 463 64.6
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 2.7e-160 569.3 467 65.5
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 3.5e-160 568.9 458 65.9
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 4.5e-160 568.5 435 67.6
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 1.3e-159 567.0 465 63.7
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 1.3e-159 567.0 460 64.6
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 1.7e-159 566.6 460 64.1
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 6.5e-159 564.7 460 64.3
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 1.9e-158 563.1 463 63.5
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 6.8e-156 554.7 460 63.0
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 4.1e-153 545.4 427 68.9
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 4.1e-153 545.4 487 62.2
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 5.4e-153 545.0 466 62.0
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 2.0e-152 543.1 466 62.9
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 7.7e-152 541.2 479 59.1
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 1.7e-151 540.0 473 60.5
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 6.6e-151 538.1 426 66.0
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 4.3e-150 535.4 465 62.2
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 7.3e-150 534.6 458 59.4
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 9.5e-150 534.3 465 62.2
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 1.4e-148 530.4 467 61.5
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 2.2e-146 523.1 485 57.1
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 1.8e-145 520.0 414 66.2
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 3.9e-143 512.3 422 65.4
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 1.2e-141 507.3 476 57.6
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 6.2e-141 505.0 473 58.1
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 1.1e-137 494.2 370 69.7
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 1.3e-135 487.3 360 70.8
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 3.1e-132 476.1 460 55.7
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 4.0e-132 475.7 322 76.1
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 9.8e-131 471.1 473 52.9
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.7e-130 470.3 473 53.3
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 2.1e-128 463.4 373 65.1
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 1.6e-125 453.8 460 54.6
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 6.8e-124 448.4 331 71.3
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 1.5e-123 447.2 316 73.7
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 5.1e-119 432.2 475 50.1
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 2.4e-108 396.7 348 62.4
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.2e-107 394.4 514 47.7
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 1.9e-105 387.1 331 61.9
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 6.7e-103 378.6 320 65.0
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 1.1e-100 371.3 364 54.7
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 4.8e-93 345.9 304 64.5
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 9.3e-89 331.6 267 68.2
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.8e-87 327.4 349 53.0
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 2.2e-82 310.5 487 38.2
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 2.9e-82 310.1 220 72.7
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 9.1e-76 288.5 423 41.1
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 6.7e-71 272.3 350 50.0
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 3.8e-58 229.9 492 33.3
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 2.1e-48 197.6 482 32.8
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 2.7e-48 197.2 156 67.9
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 1.2e-46 191.8 203 53.7
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 6.8e-31 139.4 128 63.3
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 2.0e-30 137.9 497 26.2
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 6.4e-29 132.9 370 34.3
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 8.0e-24 115.9 402 25.4
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 1.4e-23 115.2 141 48.2
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 5.2e-23 113.2 85 67.1
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 2.0e-22 111.3 81 69.1
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 2.0e-22 111.3 81 67.9
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 7.5e-22 109.4 82 69.5
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-17 95.5 202 33.7
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 1.5e-17 95.1 100 52.0
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 4.7e-16 90.1 100 51.0
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 4.3e-09 67.0 72 51.4
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 1.1e-07 62.4 72 48.6


User provided reference genes

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