Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 1.2e-85 320.1 199 100.0
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 3.7e-18 95.9 146 44.5
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 2.4e-17 93.2 146 45.9
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 2.4e-17 93.2 112 56.2
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 3.2e-17 92.8 132 43.9
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 7.0e-17 91.7 133 48.1
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 4.6e-16 89.0 128 50.0
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 2.3e-15 86.7 117 47.9
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 2.3e-15 86.7 146 45.2
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 3.0e-15 86.3 128 47.7
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.0e-15 85.5 166 42.8
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 8.6e-15 84.7 166 42.2
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.5e-14 84.0 149 44.3
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 1.5e-14 84.0 117 48.7
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 4.3e-14 82.4 146 45.2
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 7.3e-14 81.6 152 40.8
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 7.3e-14 81.6 166 41.6
Duzib093G1766 Durio zibethinus HOM05D004728 ORTHO05D002375 9.5e-14 81.3 93 61.3
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 9.5e-14 81.3 186 36.6
FAN04G1034 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.2e-13 80.9 107 55.1
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 1.2e-13 80.9 94 58.5
DCAR_012878 Daucus carota HOM05D004728 ORTHO05D002375 2.1e-13 80.1 126 48.4
FvH4_5g36280 Fragaria vesca HOM05D004728 ORTHO05D002375 2.1e-13 80.1 127 49.6
FAN08G2352 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.8e-13 79.7 105 61.0
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 2.8e-13 79.7 196 39.3
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 3.6e-13 79.3 128 49.2
RcHm_v2.0_Chr7g0238181 Rosa chinensis HOM05D004728 ORTHO05D002375 3.6e-13 79.3 146 54.1
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 4.7e-13 79.0 155 37.4
Duzib041G0412 Durio zibethinus HOM05D004728 ORTHO05D002375 6.2e-13 78.6 150 45.3
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 1.1e-12 77.8 139 44.6
COL.COLO4_11997 Corchorus olitorius HOM05D004728 ORTHO05D002375 1.4e-12 77.4 152 50.0
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 1.4e-12 77.4 146 45.2
MSTRG.1387 Avicennia marina HOM05D004728 ORTHO05D002375 3.1e-12 76.3 183 38.3
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 4.0e-12 75.9 159 40.9
FAN13G0425 Fragaria x ananassa HOM05D004728 ORTHO05D002375 6.8e-12 75.1 108 50.9
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 6.8e-12 75.1 156 37.8
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 6.8e-12 75.1 102 49.0
CiPaw.16G032400 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.2e-11 74.3 117 45.3
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 1.2e-11 74.3 150 38.0
Gohir.D05G225700 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.2e-11 74.3 157 42.7
Thecc.08G100800 Theobroma cacao HOM05D004728 ORTHO05D002375 1.2e-11 74.3 136 54.4
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 1.5e-11 73.9 158 38.0
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 1.5e-11 73.9 158 37.3
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 1.5e-11 73.9 182 36.3
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 2.0e-11 73.6 103 48.5
CiPaw.15G045000 Carya illinoinensis HOM05D004728 ORTHO05D002375 2.6e-11 73.2 130 40.0
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 3.4e-11 72.8 121 44.6
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 3.4e-11 72.8 124 46.8
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 5.8e-11 72.0 150 41.3
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 5.8e-11 72.0 117 34.2
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 7.5e-11 71.6 167 35.3
Actinidia10350 Actinidia chinensis HOM05D004728 ORTHO05D002375 9.8e-11 71.2 178 39.3
Eucgr.F00382 Eucalyptus grandis HOM05D004728 ORTHO05D002375 9.8e-11 71.2 113 46.9
Gohir.A05G223000 Gossypium hirsutum HOM05D004728 ORTHO05D002375 9.8e-11 71.2 116 50.9
Potri.002G101600 Populus trichocarpa HOM05D004728 ORTHO05D002375 9.8e-11 71.2 90 57.8
RcHm_v2.0_Chr7g0238201 Rosa chinensis HOM05D004728 ORTHO05D002375 9.8e-11 71.2 187 41.7
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 1.7e-10 70.5 161 37.9
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 2.2e-10 70.1 118 46.6
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 2.2e-10 70.1 135 27.4
Actinidia29600 Actinidia chinensis HOM05D004728 ORTHO05D002375 3.7e-10 69.3 164 39.0
DCAR_012879 Daucus carota HOM05D004728 ORTHO05D002375 3.7e-10 69.3 177 39.5
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 3.7e-10 69.3 168 37.5
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 4.9e-10 68.9 138 42.8
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 4.9e-10 68.9 129 26.4
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 6.4e-10 68.6 168 36.3
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 8.3e-10 68.2 120 45.8
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 8.3e-10 68.2 121 46.3
Prupe.1G524300 Prunus persica HOM05D004728 ORTHO05D002375 8.3e-10 68.2 70 48.6
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.1e-09 67.8 173 24.3
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 1.1e-09 67.8 100 46.0
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 1.4e-09 67.4 134 37.3
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 1.4e-09 67.4 120 47.5
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 1.4e-09 67.4 153 37.3
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 1.9e-09 67.0 121 44.6
Lj4A728T44 Lonicera japonica HOM05D004728 ORTHO05D002375 1.9e-09 67.0 129 42.6
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 1.9e-09 67.0 124 40.3
MSTRG.1389 Avicennia marina HOM05D004728 ORTHO05D002375 3.2e-09 66.2 105 51.4
MSTRG.25397 Avicennia marina HOM05D004728 ORTHO05D002375 3.2e-09 66.2 120 50.8
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 3.2e-09 66.2 118 45.8
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 4.1e-09 65.9 89 49.4
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 5.4e-09 65.5 102 46.1
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 5.4e-09 65.5 124 36.3
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 5.4e-09 65.5 164 36.0
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 5.4e-09 65.5 89 52.8
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 7.0e-09 65.1 90 48.9
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 9.2e-09 64.7 153 36.6
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 9.2e-09 64.7 161 32.9
Hund14099 Selenicereus undatus HOM05D004728 ORTHO05D002375 9.2e-09 64.7 90 57.8
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.2e-08 64.3 168 32.7
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 1.2e-08 64.3 118 31.4
QL02p002250 Quercus lobata HOM05D004728 ORTHO05D002375 1.2e-08 64.3 145 42.8
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 1.2e-08 64.3 188 32.4
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 1.2e-08 64.3 165 36.4
Peaxi162Scf01184g00014 Petunia axillaris HOM05D004728 ORTHO05D002375 1.6e-08 63.9 160 43.8
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 1.6e-08 63.9 91 48.4
HanXRQChr17g0561041 Helianthus annuus HOM05D004728 ORTHO05D002375 2.0e-08 63.5 144 25.0
MSTRG.1471 Avicennia marina HOM05D004728 ORTHO05D002375 2.7e-08 63.2 107 50.5
QL02p002263 Quercus lobata HOM05D004728 ORTHO05D002375 2.7e-08 63.2 141 40.4
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 4.6e-08 62.4 153 35.3
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 4.6e-08 62.4 132 35.6
vmacro04704 Vaccinium macrocarpon HOM05D004728 ORTHO05D002375 4.6e-08 62.4 113 46.0
MSTRG.1388 Avicennia marina HOM05D004728 ORTHO05D002375 6.0e-08 62.0 135 39.3
AUR62027821 Chenopodium quinoa HOM05D059013 ORTHO05D002375 7.8e-08 61.6 111 27.9
HanXRQChr05g0149651 Helianthus annuus HOM05D004728 ORTHO05D002375 7.8e-08 61.6 89 48.3
Prupe.6G194200 Prunus persica HOM05D004728 ORTHO05D002375 1.0e-07 61.2 51 51.0
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 1.3e-07 60.8 129 41.9
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 1.3e-07 60.8 129 41.9
HanXRQChr09g0250741 Helianthus annuus HOM05D004728 ORTHO05D002375 1.3e-07 60.8 184 28.3
Prupe.6G194100 Prunus persica HOM05D004728 ORTHO05D002375 1.3e-07 60.8 130 49.2
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 1.3e-07 60.8 189 31.7
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 1.7e-07 60.5 155 26.5
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 2.3e-07 60.1 136 26.5
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 2.3e-07 60.1 89 49.4
ECA232G1403 Erigeron canadensis HOM05D000469 ORTHO05D000131 3.0e-07 59.7 91 49.5
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 3.9e-07 59.3 136 39.7
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 5.0e-07 58.9 141 44.0
MD15G1317500 Malus domestica HOM05D004728 ORTHO05D002375 6.6e-07 58.5 71 42.3
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 6.6e-07 58.5 112 42.0
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 8.6e-07 58.2 91 48.4
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 8.6e-07 58.2 87 48.3
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 1.1e-06 57.8 122 29.5
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 1.5e-06 57.4 144 36.1
Migut.C01161 Erythranthe guttata HOM05D004728 ORTHO05D002375 1.5e-06 57.4 94 55.3
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 1.5e-06 57.4 86 48.8
Hma1.2p1_1180F.1_g264660 Hydrangea macrophylla HOM05D004728 ORTHO05D002375 1.5e-06 57.4 115 45.2
Oeu000784.1 Olea europaea HOM05D004728 ORTHO05D002375 1.5e-06 57.4 175 39.4
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 1.9e-06 57.0 112 30.4
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 1.9e-06 57.0 89 50.6
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 2.5e-06 56.6 110 42.7
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 2.5e-06 56.6 113 42.5
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 2.5e-06 56.6 91 29.7
Lsat_1_v5_gn_1_2980 Lactuca sativa HOM05D004728 ORTHO05D002375 2.5e-06 56.6 116 42.2
MD15G1317800 Malus domestica HOM05D004728 ORTHO05D002375 2.5e-06 56.6 79 55.7
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 2.5e-06 56.6 101 25.7
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 3.3e-06 56.2 119 26.9
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 3.3e-06 56.2 119 26.9
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 3.3e-06 56.2 123 37.4
PGSC0003DMG400030843 Solanum tuberosum HOM05D021150 ORTHO05D002375 3.3e-06 56.2 98 52.0
SGA_v2.0_scaffold24G10482 Striga asiatica HOM05D004728 ORTHO05D002375 3.3e-06 56.2 142 40.8
Oeu045992.1 Olea europaea HOM05D004728 ORTHO05D002375 4.3e-06 55.8 138 39.1
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 4.3e-06 55.8 89 29.2
Rhsim07G0205400 Rhododendron simsii HOM05D004728 ORTHO05D002375 4.3e-06 55.8 109 39.4
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 5.6e-06 55.5 91 28.6
SGA_v2.0_scaffold52G18993 Striga asiatica HOM05D004728 ORTHO05D002375 5.6e-06 55.5 138 40.6
ECA247G0078 Erigeron canadensis HOM05D004728 ORTHO05D002375 7.3e-06 55.1 89 49.4
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 9.5e-06 54.7 121 38.8
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 9.5e-06 54.7 87 47.1
HanXRQChr13g0391971 Helianthus annuus HOM05D004728 ORTHO05D002375 9.5e-06 54.7 150 22.7
Lsat_1_v5_gn_9_73660 Lactuca sativa HOM05D004728 ORTHO05D045252 9.5e-06 54.7 75 50.7
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 9.5e-06 54.7 74 52.7
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 9.5e-06 54.7 95 49.5


User provided reference genes

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