Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 2.8e-76 288.5 144 100.0
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 1.3e-60 236.5 144 75.0
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 3.7e-60 235.0 127 82.7
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 8.3e-60 233.8 128 82.0
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 1.1e-59 233.4 128 81.2
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 2.4e-59 232.3 126 80.2
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 5.4e-59 231.1 143 74.1
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 5.4e-59 231.1 129 79.8
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 7.0e-59 230.7 146 78.8
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 9.2e-59 230.3 128 80.5
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 9.2e-59 230.3 123 82.9
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 1.6e-58 229.6 126 78.6
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.6e-58 229.6 123 82.9
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 2.0e-58 229.2 128 78.9
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.7e-58 228.8 143 73.4
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 5.9e-58 227.6 144 72.2
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.0e-57 226.9 143 72.0
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 1.7e-57 226.1 122 82.8
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 2.3e-57 225.7 148 70.9
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.9e-57 225.3 128 78.1
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 3.8e-57 224.9 126 77.8
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 3.8e-57 224.9 125 80.0
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 6.6e-57 224.2 140 72.9
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 8.6e-57 223.8 125 79.2
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 1.9e-56 222.6 130 76.9
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 2.5e-56 222.2 148 68.9
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 3.3e-56 221.9 127 75.6
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 1.6e-55 219.5 124 78.2
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.6e-55 219.5 123 78.9
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 2.8e-55 218.8 122 77.0
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.8e-55 218.8 127 75.6
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 2.8e-55 218.8 123 75.6
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 4.7e-55 218.0 143 69.2
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 6.1e-55 217.6 145 70.3
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 2.3e-54 215.7 127 74.0
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 4.0e-54 214.9 124 75.8
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 4.0e-54 214.9 118 78.8
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 4.0e-54 214.9 127 73.2
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 4.0e-54 214.9 128 78.1
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 6.8e-54 214.2 127 74.8
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 6.8e-54 214.2 119 79.8
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 8.9e-54 213.8 127 74.8
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.2e-53 213.4 126 74.6
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.2e-53 213.4 117 80.3
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 1.5e-53 213.0 128 77.3
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 1.5e-53 213.0 125 74.4
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 5.8e-53 211.1 128 74.2
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 7.5e-53 210.7 123 73.2
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 7.5e-53 210.7 129 75.2
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.7e-52 209.5 126 73.0
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 2.2e-52 209.1 122 76.2
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 2.9e-52 208.8 127 73.2
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 3.7e-52 208.4 123 71.5
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 6.4e-52 207.6 125 72.8
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 8.3e-52 207.2 127 70.1
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 8.3e-52 207.2 143 68.5
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 1.1e-51 206.8 123 73.2
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.4e-51 206.5 127 71.7
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 1.4e-51 206.5 120 73.3
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 1.4e-51 206.5 119 76.5
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 1.8e-51 206.1 139 66.9
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 1.8e-51 206.1 123 74.8
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.4e-51 205.7 145 65.5
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 2.4e-51 205.7 119 77.3
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 4.1e-51 204.9 128 71.9
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 5.4e-51 204.5 150 61.3
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 7.0e-51 204.1 123 72.4
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 9.2e-51 203.8 144 63.9
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 9.2e-51 203.8 128 71.1
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 9.2e-51 203.8 123 71.5
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 9.2e-51 203.8 122 71.3
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 9.2e-51 203.8 129 71.3
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.2e-50 203.4 123 73.2
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 2.0e-50 202.6 123 71.5
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 2.7e-50 202.2 123 72.4
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 2.7e-50 202.2 123 72.4
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 2.7e-50 202.2 123 72.4
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 6.0e-50 201.1 123 71.5
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 6.0e-50 201.1 123 69.9
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 7.8e-50 200.7 123 71.5
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.7e-49 199.5 127 69.3
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 3.9e-49 198.4 123 71.5
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 6.6e-49 197.6 126 72.2
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 8.6e-49 197.2 145 64.1
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 8.6e-49 197.2 127 71.7
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.1e-48 196.8 128 70.3
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 1.5e-48 196.4 124 71.8
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.5e-48 196.4 134 70.1
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 2.5e-48 195.7 127 66.9
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 2.8e-47 192.2 127 68.5
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 4.7e-47 191.4 120 70.0
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.1e-46 190.3 123 68.3
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.1e-46 190.3 123 68.3
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.8e-46 189.5 120 70.0
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 3.1e-46 188.7 120 65.8
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 3.4e-45 185.3 129 67.4
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.9e-44 182.2 109 72.5
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 3.7e-44 181.8 125 62.4
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 6.4e-44 181.0 125 61.6
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.3e-41 172.6 128 65.6
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 3.7e-36 155.2 84 78.6
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 6.6e-33 144.4 124 58.1
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.1e-32 143.7 80 76.2
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 1.6e-31 139.8 118 51.7
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.1e-30 135.6 81 72.8
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 4.0e-30 135.2 117 49.6
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 4.9e-28 128.3 96 56.2
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 1.1e-27 127.1 121 54.5
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 7.1e-27 124.4 123 49.6
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 3.5e-26 122.1 114 46.5
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 8.7e-25 117.5 74 70.3
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 1.5e-24 116.7 128 50.0
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.8e-22 109.8 92 53.3
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 2.4e-22 109.4 92 52.2
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 9.0e-22 107.5 89 52.8
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 2.9e-20 102.4 93 46.2
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 6.4e-20 101.3 59 72.9
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 7.8e-18 94.4 93 47.3
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 8.7e-17 90.9 92 47.8
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 2.5e-16 89.4 99 40.4
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 8.4e-12 74.3 56 57.1
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.9e-11 73.2 69 50.7
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.1e-10 69.7 63 54.0
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 6.7e-09 64.7 64 46.9
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 1.1e-08 63.9 38 73.7
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 3.7e-07 58.9 35 65.7
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 8.1e-07 57.8 40 60.0
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.1e-06 57.4 47 61.7
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 5.3e-06 55.1 88 37.5


User provided reference genes

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