Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 9.9e-286 986.1 502 100.0
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 4.9e-216 754.6 496 73.2
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 2.3e-213 745.7 495 71.7
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 2.3e-210 735.7 495 71.7
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 4.0e-210 734.9 491 70.9
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 2.9e-208 728.8 492 71.1
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 9.2e-207 723.8 491 71.3
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 2.1e-203 712.6 495 68.5
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 4.7e-203 711.4 495 68.9
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.2e-203 711.1 510 68.2
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.2e-203 711.1 510 68.2
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.2e-203 711.1 510 68.2
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 1.4e-202 709.9 495 68.3
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 1.4e-202 709.9 466 72.7
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 1.8e-202 709.5 491 68.4
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 1.8e-202 709.5 495 68.5
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 5.2e-202 708.0 495 68.5
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 5.2e-202 708.0 491 69.2
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 4.4e-201 704.9 494 68.8
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 7.5e-201 704.1 488 68.4
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 2.9e-200 702.2 495 69.1
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 4.9e-200 701.4 495 69.7
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 6.4e-200 701.0 495 68.3
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 8.3e-200 700.7 491 68.6
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.4e-199 699.9 510 67.6
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 3.2e-199 698.7 491 68.0
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 7.1e-199 697.6 495 67.7
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 3.5e-198 695.3 495 68.3
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 6.0e-198 694.5 496 67.1
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 2.3e-197 692.6 495 67.5
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 2.3e-197 692.6 467 70.9
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 3.9e-197 691.8 491 68.2
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 8.6e-197 690.6 483 68.7
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 8.6e-197 690.6 491 68.0
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 1.1e-196 690.3 485 68.5
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 5.6e-196 688.0 496 66.1
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 3.6e-195 685.3 491 67.0
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 1.8e-194 682.9 491 66.8
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 2.4e-194 682.6 494 66.6
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 4.0e-194 681.8 491 67.6
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 5.2e-194 681.4 466 70.4
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 6.8e-194 681.0 495 66.3
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 6.4e-192 674.5 495 65.7
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 1.4e-191 673.3 467 67.2
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 2.4e-191 672.5 546 62.5
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 7.8e-190 667.5 491 66.4
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 1.0e-189 667.2 546 61.9
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 1.9e-188 662.9 490 63.9
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 1.9e-188 662.9 490 63.5
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 1.2e-187 660.2 491 63.5
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 1.6e-187 659.8 491 63.5
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 2.1e-187 659.4 491 63.3
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 2.1e-187 659.4 491 63.3
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 2.8e-187 659.1 471 66.5
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 4.7e-187 658.3 459 69.9
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 6.2e-187 657.9 517 64.4
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 1.8e-186 656.4 495 64.2
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 1.8e-186 656.4 490 63.3
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 3.1e-186 655.6 490 62.7
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 2.9e-184 649.0 491 63.1
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 1.1e-183 647.1 494 63.6
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 5.4e-183 644.8 491 63.1
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 9.3e-183 644.0 491 62.9
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 9.3e-183 644.0 438 72.6
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 9.3e-183 644.0 495 63.8
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 1.0e-181 640.6 497 63.6
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 9.6e-180 634.0 522 59.0
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 1.4e-178 630.2 470 60.9
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 1.5e-177 626.7 475 61.1
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 1.8e-173 613.2 452 63.3
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 6.7e-173 611.3 482 61.0
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 6.7e-173 611.3 491 58.5
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 2.1e-171 606.3 530 59.1
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 3.7e-171 605.5 503 60.2
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 8.1e-171 604.4 502 60.8
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 1.4e-170 603.6 478 61.3
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 4.9e-168 595.1 529 55.8
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 3.2e-167 592.4 606 52.6
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 1.5e-164 583.6 495 58.2
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 1.5e-164 583.6 473 62.4
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.1e-162 577.4 430 66.3
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 9.0e-162 574.3 490 57.6
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 1.4e-159 567.0 394 68.5
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 1.0e-157 560.8 410 64.6
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 3.3e-156 555.8 412 65.8
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 1.7e-152 543.5 510 55.3
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 3.6e-150 535.8 395 65.8
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 6.3e-147 525.0 518 51.5
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 6.7e-141 505.0 664 44.7
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 1.1e-138 497.7 520 53.8
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 5.3e-138 495.4 495 50.9
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 9.1e-138 494.6 484 51.4
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 4.2e-135 485.7 483 49.7
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 9.4e-135 484.6 461 54.2
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 3.7e-131 472.6 488 49.4
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 6.3e-131 471.9 334 69.8
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 1.7e-128 463.8 345 68.1
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 1.8e-125 453.8 361 62.9
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 1.0e-120 438.0 429 52.0
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 7.0e-114 415.2 441 52.2
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 5.9e-113 412.1 344 59.6
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 5.5e-111 405.6 988 31.0
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 1.1e-103 381.3 310 62.6
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 6.4e-91 339.0 438 47.0
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 1.6e-89 334.3 238 68.1
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 3.3e-87 326.6 503 39.6
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 2.4e-74 283.9 554 34.5
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.6e-72 275.8 204 69.1
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 3.8e-67 260.0 480 36.7
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 1.9e-63 247.7 299 48.2
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 3.1e-61 240.4 161 68.3
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 4.9e-59 233.0 183 58.5
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.1e-57 227.6 225 56.4
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 1.4e-50 204.9 161 65.8
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 1.0e-40 172.2 116 73.3
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 8.7e-40 169.1 112 63.4
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 3.9e-32 143.7 150 48.0
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 2.3e-24 117.9 67 74.6
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 2.3e-24 117.9 82 73.2
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.7e-19 101.7 77 63.6
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 1.9e-18 98.2 66 71.2
arahy.Tifrunner.gnm1.ann1.PL2W5K Arachis hypogaea HOM05D006213 ORTHO05D008107 3.6e-17 94.0 79 50.6
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 7.0e-13 79.7 41 82.9
TPR.G39431 Trifolium pratense HOM05D006213 ORTHO05D008107 1.2e-12 79.0 45 80.0
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 1.9e-10 71.6 56 60.7
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 1.6e-09 68.6 49 61.2
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 8.0e-09 66.2 223 26.0
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 1.5e-07 62.0 155 25.8
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 2.0e-07 61.6 122 31.1
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 3.4e-07 60.8 169 27.2
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 3.4e-07 60.8 169 27.2
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 6.3e-06 56.6 101 33.7
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 6.3e-06 56.6 104 33.7
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 8.3e-06 56.2 112 28.6


User provided reference genes

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