Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 3.6e-143 511.5 250 100.0
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 3.3e-104 382.1 250 73.6
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 4.7e-103 378.3 248 73.4
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 4.0e-102 375.2 250 72.4
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 8.9e-102 374.0 255 70.6
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 1.5e-101 373.2 250 73.2
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 4.4e-101 371.7 250 72.8
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 2.2e-100 369.4 251 72.1
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 3.2e-99 365.5 250 71.2
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 4.1e-99 365.2 250 71.6
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 1.2e-98 363.6 236 75.0
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 2.7e-98 362.5 250 71.2
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 3.0e-97 359.0 250 73.2
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 3.9e-97 358.6 249 69.9
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 6.6e-97 357.8 250 70.4
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 6.6e-97 357.8 250 69.2
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 6.6e-97 357.8 250 69.2
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 1.5e-96 356.7 250 70.4
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 1.5e-96 356.7 250 68.0
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.9e-96 356.3 250 70.0
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 9.5e-96 354.0 250 70.0
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 2.1e-95 352.8 245 69.0
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 2.8e-95 352.4 252 69.4
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 4.7e-95 351.7 250 68.0
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 4.7e-95 351.7 253 68.4
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.8e-94 349.7 250 68.8
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 6.8e-94 347.8 250 67.2
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 8.9e-94 347.4 245 68.2
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 1.2e-93 347.1 250 70.0
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 1.5e-93 346.7 251 68.1
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 1.5e-93 346.7 251 68.1
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 1.5e-93 346.7 250 70.4
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 9.9e-93 344.0 252 65.9
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 9.9e-93 344.0 250 67.6
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 3.8e-92 342.0 245 66.1
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 6.4e-92 341.3 250 66.8
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 8.4e-92 340.9 253 68.0
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 1.4e-91 340.1 250 65.6
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 1.9e-91 339.7 251 66.9
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 3.2e-91 339.0 250 66.8
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 4.1e-91 338.6 243 67.1
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 5.4e-91 338.2 251 66.9
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 7.1e-91 337.8 245 66.1
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 7.1e-91 337.8 251 65.3
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 7.1e-91 337.8 250 64.8
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 9.2e-91 337.4 251 67.3
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 1.2e-90 337.0 252 66.3
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 2.1e-90 336.3 251 66.9
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 2.1e-90 336.3 250 64.0
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 2.1e-90 336.3 250 62.8
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 7.8e-90 334.3 260 66.2
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 1.7e-89 333.2 252 65.9
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 1.7e-89 333.2 245 66.1
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 6.6e-89 331.3 250 66.0
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 8.6e-89 330.9 250 65.2
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 1.1e-88 330.5 246 65.9
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 1.5e-88 330.1 250 65.6
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 1.5e-88 330.1 251 65.7
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 4.3e-88 328.6 251 64.9
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 1.6e-87 326.6 255 65.1
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 2.8e-87 325.9 233 66.5
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 4.7e-87 325.1 250 63.2
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 4.7e-87 325.1 248 63.7
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 8.1e-87 324.3 261 63.6
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 1.1e-86 323.9 251 62.9
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 1.1e-86 323.9 251 64.1
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 1.4e-86 323.6 257 64.2
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 6.9e-86 321.2 251 64.5
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 1.5e-85 320.1 248 63.7
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.5e-85 320.1 222 70.3
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 2.0e-85 319.7 226 66.8
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 6.4e-84 314.7 250 62.8
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 1.4e-83 313.5 250 59.6
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 3.2e-83 312.4 315 53.7
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 7.1e-83 311.2 251 59.8
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 2.1e-82 309.7 233 63.9
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 2.1e-82 309.7 226 66.8
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 2.1e-82 309.7 258 58.5
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 4.6e-82 308.5 302 56.6
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 1.3e-81 307.0 226 65.5
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 7.3e-80 301.2 301 53.5
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 9.6e-80 300.8 250 58.4
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 2.4e-78 296.2 247 58.3
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 3.1e-78 295.8 250 57.2
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 5.3e-78 295.0 278 55.4
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 5.8e-77 291.6 250 57.6
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 2.9e-76 289.3 250 61.6
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 3.8e-76 288.9 241 59.3
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 6.4e-76 288.1 200 70.0
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 1.1e-75 287.3 187 73.3
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 1.2e-74 283.9 199 68.3
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 1.5e-72 276.9 189 69.8
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 5.6e-72 275.0 187 71.7
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 2.0e-69 266.5 212 59.4
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 4.5e-69 265.4 248 55.2
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 3.8e-68 262.3 245 56.3
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 3.9e-65 252.3 249 53.4
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 1.5e-64 250.4 245 51.8
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 3.3e-64 249.2 190 60.5
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 9.3e-59 231.1 207 57.5
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 9.6e-56 221.1 165 65.5
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.2e-53 214.2 188 59.0
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 4.4e-40 169.1 120 64.2
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 5.9e-37 158.7 219 40.6
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 2.2e-31 140.2 182 44.0
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 8.0e-26 121.7 187 39.0
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 1.8e-25 120.6 187 38.5
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 4.8e-23 112.5 207 31.9
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 1.8e-22 110.5 210 31.4
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 1.7e-20 104.0 135 48.1
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 1.5e-19 100.9 185 35.7
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.4e-17 94.4 130 42.3
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 5.2e-17 92.4 163 33.1
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 1.2e-16 91.3 68 70.6
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 1.8e-14 84.0 72 56.9
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 3.6e-10 69.7 65 52.3
TPR.G17639 Trifolium pratense HOM05D007231 ORTHO05D009024 6.3e-07 58.9 45 57.8
TPR.G23952 Trifolium pratense HOM05D007231 ORTHO05D009024 6.3e-07 58.9 45 57.8


User provided reference genes

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