Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 2.4e-166 589.0 345 100.0
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 1.6e-117 426.8 344 69.2
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 2.0e-115 419.9 361 62.6
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 6.9e-113 411.4 360 61.4
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 2.9e-111 406.0 357 62.2
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 5.0e-111 405.2 344 60.8
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.4e-110 403.7 345 60.3
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 1.9e-110 403.3 344 60.5
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 1.6e-109 400.2 346 62.1
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 1.6e-109 400.2 354 59.9
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 3.6e-109 399.1 351 68.7
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 6.1e-109 398.3 354 58.8
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.0e-108 397.5 342 56.7
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 1.4e-108 397.1 348 66.4
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 2.3e-108 396.4 355 68.2
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 5.2e-108 395.2 345 65.5
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 6.7e-108 394.8 333 64.6
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 6.7e-108 394.8 345 65.5
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 8.8e-108 394.4 348 68.1
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.1e-107 394.0 355 65.4
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 2.0e-107 393.3 340 57.6
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 2.6e-107 392.9 329 63.5
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 2.6e-107 392.9 354 57.6
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 4.4e-107 392.1 349 68.2
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 4.1e-105 385.6 343 64.1
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 9.1e-105 384.4 357 57.1
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 3.5e-104 382.5 345 60.9
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 2.9e-103 379.4 348 56.6
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 1.1e-102 377.5 357 60.2
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 1.1e-102 377.5 345 66.1
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 1.9e-102 376.7 351 64.4
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 1.9e-102 376.7 347 59.7
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 5.5e-102 375.2 333 70.0
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 5.5e-102 375.2 345 63.8
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 1.6e-101 373.6 347 54.8
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 2.1e-101 373.2 329 63.2
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 2.7e-101 372.9 345 60.9
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 8.0e-101 371.3 348 56.6
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 1.2e-99 367.5 342 64.3
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 9.7e-99 364.4 349 52.4
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 1.7e-98 363.6 341 63.3
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 8.2e-98 361.3 355 68.5
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 2.4e-97 359.8 357 53.8
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 1.6e-96 357.1 349 64.5
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 7.7e-96 354.8 338 54.7
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.7e-95 353.6 382 55.0
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 8.5e-95 351.3 353 56.9
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 7.2e-94 348.2 323 60.4
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 3.6e-93 345.9 332 52.7
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 3.6e-93 345.9 345 52.5
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 1.4e-92 344.0 344 48.3
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 3.0e-92 342.8 344 53.2
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 6.8e-92 341.7 342 57.6
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 1.2e-91 340.9 345 48.1
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 1.2e-91 340.9 345 50.4
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.4e-91 339.3 340 50.0
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 4.4e-91 339.0 348 52.3
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 5.7e-91 338.6 342 52.6
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 7.5e-91 338.2 346 60.1
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 1.7e-90 337.0 344 59.6
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 2.2e-90 336.7 340 57.6
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 6.5e-87 325.1 294 57.8
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 8.5e-87 324.7 341 55.7
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 1.5e-86 323.9 344 57.0
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 1.9e-86 323.6 342 59.1
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 1.9e-86 323.6 338 51.5
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 3.2e-86 322.8 342 59.1
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 3.2e-86 322.8 346 52.6
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 2.1e-85 320.1 343 56.6
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 2.1e-85 320.1 343 56.6
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 2.1e-85 320.1 343 56.6
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 2.8e-85 319.7 343 56.9
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 4.7e-85 318.9 343 56.6
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 6.1e-85 318.5 337 51.9
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 1.4e-84 317.4 341 61.3
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 1.8e-84 317.0 342 53.2
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 2.3e-84 316.6 342 53.2
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 2.3e-84 316.6 340 54.1
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 6.8e-84 315.1 342 52.9
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 8.8e-84 314.7 348 58.3
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 4.4e-83 312.4 377 58.4
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 9.8e-83 311.2 354 54.0
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 1.7e-82 310.5 382 51.6
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 3.7e-82 309.3 359 55.2
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 1.1e-81 307.8 343 50.1
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 1.4e-81 307.4 341 55.7
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 3.1e-81 306.2 349 50.7
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 3.1e-81 306.2 343 54.8
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 4.1e-81 305.8 349 50.1
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 5.4e-81 305.4 333 48.9
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 2.9e-79 299.7 344 57.6
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 3.8e-79 299.3 340 53.8
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.1e-78 297.7 330 49.7
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 2.5e-78 296.6 353 56.1
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 6.8e-76 288.5 351 45.3
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 4.1e-73 279.3 343 55.7
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 1.0e-71 274.6 337 49.3
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.5e-70 270.8 339 41.3
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.5e-70 270.0 342 41.2
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.5e-70 270.0 343 41.1
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 6.2e-69 265.4 333 45.3
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 8.9e-68 261.5 325 54.2
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 6.0e-64 248.8 280 57.1
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 6.0e-64 248.8 339 40.1
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 1.6e-61 240.7 319 53.0
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 2.8e-61 240.0 343 54.8
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 1.4e-60 237.7 331 40.5
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 1.5e-59 234.2 393 44.5
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 1.6e-56 224.2 336 37.8
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.1e-55 219.2 346 47.4
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 1.2e-53 214.5 341 37.2
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 1.6e-53 214.2 128 73.4
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 1.3e-50 204.5 128 75.0
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 7.8e-48 195.3 148 62.8
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 7.3e-46 188.7 341 41.9
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.1e-41 174.9 179 53.1
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 1.4e-41 174.5 127 59.1
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.7e-40 170.2 257 37.0
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 1.9e-33 147.5 141 48.2
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.7e-26 124.4 321 28.0
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.2e-24 118.2 114 47.4
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.6e-24 117.9 338 26.0
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.3e-22 109.8 149 40.3
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 6.2e-21 105.9 142 39.4
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 9.0e-20 102.1 350 29.7
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.8e-19 99.4 230 42.6
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 1.3e-15 88.2 63 65.1
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 3.4e-11 73.6 56 58.9
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 4.2e-09 66.6 88 38.6
AagrBONN_evm.TU.Sc2ySwM_368.1639 Anthoceros agrestis HOM05D006293 ORTHO05D009176 3.3e-06 57.0 127 29.1
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 3.3e-06 57.0 118 33.9


User provided reference genes

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