Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1766 Cannabis sativa HOM05D001749 ORTHO05D001632 3.6e-147 525.0 285 100.0
Cfa013859 Carpinus fangiana HOM05D009764 ORTHO05D001632 3.5e-25 119.8 282 35.1
Haze_22534 Corylus avellana HOM05D009764 ORTHO05D001632 1.7e-24 117.5 282 34.4
CiPaw.08G059600 Carya illinoinensis HOM05D009764 ORTHO05D001632 2.9e-24 116.7 277 34.3
CiPaw.07G158700 Carya illinoinensis HOM05D009764 ORTHO05D001632 2.5e-23 113.6 271 34.7
Nn5g29676 Nelumbo nucifera HOM05D001749 ORTHO05D001632 1.6e-17 94.4 274 32.8
TAR628G1444 Trochodendron aralioides HOM05D001749 ORTHO05D001632 1.6e-17 94.4 274 32.5
Nn1g04912 Nelumbo nucifera HOM05D001749 ORTHO05D001632 5.9e-17 92.4 276 30.8
MBI16_g30353_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 1.0e-16 91.7 271 29.9
TAR381G0807 Trochodendron aralioides HOM05D001749 ORTHO05D001632 3.8e-16 89.7 272 30.1
MBI10_g06727_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 5.5e-15 85.9 273 32.6
PSO541G5621 Papaver somniferum HOM05D001749 ORTHO05D001632 7.2e-15 85.5 267 29.6
HanXRQChr09g0261391 Helianthus annuus HOM05D001749 ORTHO05D001632 2.1e-14 84.0 273 29.3
Cpa.g.sc1139.1 Carica papaya HOM05D001749 ORTHO05D001632 2.7e-14 83.6 270 28.9
Dinv40015 Davidia involucrata HOM05D001749 ORTHO05D001632 6.1e-14 82.4 263 29.3
PSO675G0347 Papaver somniferum HOM05D001749 ORTHO05D001632 1.8e-13 80.9 267 29.2
Rhsim08G0119900 Rhododendron simsii HOM05D001749 ORTHO05D001632 2.3e-13 80.5 268 32.1
Gorai.009G271900 Gossypium raimondii HOM05D009764 ORTHO05D012097 6.8e-13 79.0 280 29.3
Gohir.D05G260100 Gossypium hirsutum HOM05D009764 ORTHO05D012097 1.2e-12 78.2 296 28.4
Aa31LG4G19030 Aethionema arabicum HOM05D001749 ORTHO05D001632 2.6e-12 77.0 276 28.6
Manes.11G085200 Manihot esculenta HOM05D001749 ORTHO05D001632 3.4e-12 76.6 272 27.6
COL.COLO4_26261 Corchorus olitorius HOM05D009764 ORTHO05D012097 4.4e-12 76.3 294 30.6
Atru.chr5.3055 Acer truncatum HOM05D001749 ORTHO05D001632 5.7e-12 75.9 272 30.1
Gohir.A05G258364 Gossypium hirsutum HOM05D009764 ORTHO05D012097 7.5e-12 75.5 282 28.7
Manes.04G074762 Manihot esculenta HOM05D001749 ORTHO05D001632 7.5e-12 75.5 270 28.1
Sopen02g029630 Solanum pennellii HOM05D001749 ORTHO05D001632 7.5e-12 75.5 237 29.1
Cfa005037 Carpinus fangiana HOM05D001749 ORTHO05D001632 9.7e-12 75.1 270 27.4
Dinv23498 Davidia involucrata HOM05D001749 ORTHO05D001632 1.7e-11 74.3 265 27.9
Thecc.08G031300 Theobroma cacao HOM05D009764 ORTHO05D012097 1.7e-11 74.3 286 28.7
Gohir.D02G095400 Gossypium hirsutum HOM05D009764 ORTHO05D012097 2.2e-11 73.9 281 30.6
Gorai.005G109100 Gossypium raimondii HOM05D009764 ORTHO05D012097 2.2e-11 73.9 281 30.6
Potri.009G119000 Populus trichocarpa HOM05D001749 ORTHO05D001632 2.2e-11 73.9 264 27.3
Aa31LG1G14960 Aethionema arabicum HOM05D001749 ORTHO05D001632 2.8e-11 73.6 268 29.1
THA.LOC104826664 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 2.8e-11 73.6 279 29.7
Gohir.A05G192100 Gossypium hirsutum HOM05D009764 ORTHO05D012097 3.7e-11 73.2 295 27.1
PGSC0003DMG400003523 Solanum tuberosum HOM05D001749 ORTHO05D001632 3.7e-11 73.2 240 28.3
Aqoxy6G01165 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 4.8e-11 72.8 267 30.0
CsaV3_2G014930 Cucumis sativus L. HOM05D001749 ORTHO05D001632 4.8e-11 72.8 274 27.0
Duzib147G1275 Durio zibethinus HOM05D001749 ORTHO05D001632 4.8e-11 72.8 271 29.5
MBI16_g08780_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 4.8e-11 72.8 274 28.1
Nitab4.5_0003001g0010 Nicotiana tabacum HOM05D001749 ORTHO05D001632 6.3e-11 72.4 245 30.6
Sabra09G0091300 Salix brachista HOM05D001749 ORTHO05D001632 6.3e-11 72.4 270 26.7
Actinidia19200 Actinidia chinensis HOM05D001749 ORTHO05D001632 8.3e-11 72.0 265 29.4
ClCG11G004240 Citrullus lanatus HOM05D001749 ORTHO05D001632 8.3e-11 72.0 270 27.8
Ciclev10004012m.g Citrus clementina HOM05D009764 ORTHO05D013404 8.3e-11 72.0 284 26.8
FvH4_2g09200 Fragaria vesca HOM05D001749 ORTHO05D001632 8.3e-11 72.0 273 31.5
FAN15G1825 Fragaria x ananassa HOM05D001749 ORTHO05D001632 8.3e-11 72.0 273 31.5
DCAR_025960 Daucus carota HOM05D001749 ORTHO05D001632 1.1e-10 71.6 263 28.1
FAN24G3069 Fragaria x ananassa HOM05D001749 ORTHO05D001632 1.1e-10 71.6 273 31.5
FAN27G1258 Fragaria x ananassa HOM05D001749 ORTHO05D001632 1.1e-10 71.6 273 31.1
Solyc02g084960.1 Solanum lycopersicum HOM05D001749 ORTHO05D001632 1.1e-10 71.6 237 30.0
Hma1.2p1_0066F.1_g036220 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 1.4e-10 71.2 265 25.3
Hma1.2p1_0224F.1_g094445 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 1.4e-10 71.2 272 29.0
Hma1.2p1_2993F.1_g331370 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 1.4e-10 71.2 272 29.0
Carub.0008s2808 Capsella rubella HOM05D001749 ORTHO05D001632 2.4e-10 70.5 265 30.9
RcHm_v2.0_Chr2g0100901 Rosa chinensis HOM05D001749 ORTHO05D001632 2.4e-10 70.5 274 27.7
AT5G66440 Arabidopsis thaliana HOM05D001749 ORTHO05D001632 3.1e-10 70.1 275 28.7
CSS0035839 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 3.1e-10 70.1 268 28.7
Prupe.8G094100 Prunus persica HOM05D001749 ORTHO05D001632 3.1e-10 70.1 268 27.6
Ciclev10029211m.g Citrus clementina HOM05D001749 ORTHO05D001632 4.1e-10 69.7 276 28.6
CARHR281310 Cardamine hirsuta HOM05D001749 ORTHO05D001632 7.0e-10 68.9 279 29.4
CsaV3_2G028910 Cucumis sativus L. HOM05D024629 ORTHO05D025095 7.0e-10 68.9 253 28.5
CSS0042795 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 9.1e-10 68.6 270 28.1
Sopen03g006620 Solanum pennellii HOM05D001749 ORTHO05D001632 9.1e-10 68.6 241 29.5
PGSC0003DMG400022575 Solanum tuberosum HOM05D001749 ORTHO05D001632 9.1e-10 68.6 244 29.9
TAR625G0803 Trochodendron aralioides HOM05D001749 ORTHO05D001632 9.1e-10 68.6 263 28.9
Aqoxy5G01581 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 1.2e-09 68.2 276 29.7
FvH4_1g12780 Fragaria vesca HOM05D001749 ORTHO05D001632 1.2e-09 68.2 267 29.2
FAN19G1879 Fragaria x ananassa HOM05D001749 ORTHO05D001632 1.2e-09 68.2 267 29.2
Nitab4.5_0001617g0020 Nicotiana tabacum HOM05D001749 ORTHO05D001632 1.2e-09 68.2 245 29.8
CiPaw.01G045700 Carya illinoinensis HOM05D001749 ORTHO05D001632 1.6e-09 67.8 239 27.6
Haze_02350 Corylus avellana HOM05D001749 ORTHO05D001632 1.6e-09 67.8 268 26.9
Lj2P456T45 Lonicera japonica HOM05D001749 ORTHO05D001632 1.6e-09 67.8 243 32.1
Duzib041G0201 Durio zibethinus HOM05D009764 ORTHO05D012097 2.0e-09 67.4 288 27.4
ECA232G4251 Erigeron canadensis HOM05D001749 ORTHO05D001632 2.7e-09 67.0 276 26.4
QL11p044367 Quercus lobata HOM05D001749 ORTHO05D001632 2.7e-09 67.0 270 27.0
MELO3C023313.2 Cucumis melo HOM05D001749 ORTHO05D001632 3.5e-09 66.6 274 26.3
Thhalv10010637m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 3.5e-09 66.6 284 27.1
FAN27G2466 Fragaria x ananassa HOM05D024874 ORTHO05D025557 4.5e-09 66.2 279 28.0
Gohir.A12G063300 Gossypium hirsutum HOM05D001749 ORTHO05D001632 4.5e-09 66.2 268 28.0
Cfa004342 Carpinus fangiana HOM05D001749 ORTHO05D001632 7.7e-09 65.5 259 26.3
Dinv36112 Davidia involucrata HOM05D003425 ORTHO05D003897 1.0e-08 65.1 275 28.4
Nitab4.5_0011923g0020 Nicotiana tabacum HOM05D001749 ORTHO05D001632 1.0e-08 65.1 246 27.6
Sp2g30290 Schrenkiella parvula HOM05D001749 ORTHO05D001632 1.0e-08 65.1 262 28.6
C08p26160 Brassica napus HOM05D001749 ORTHO05D001632 1.3e-08 64.7 284 27.5
Thhalv10004766m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 1.3e-08 64.7 274 28.5
MD10G1072700 Malus domestica HOM05D001749 ORTHO05D001632 1.3e-08 64.7 272 27.2
BolC8t50232H Brassica oleracea HOM05D001749 ORTHO05D001632 1.7e-08 64.3 282 27.7
MD02G1143400 Malus domestica HOM05D001749 ORTHO05D001632 1.7e-08 64.3 271 28.0
Manes.05G156600 Manihot esculenta HOM05D020394 ORTHO05D012097 1.7e-08 64.3 276 25.4
Potri.004G157300 Populus trichocarpa HOM05D001749 ORTHO05D001632 1.7e-08 64.3 270 27.0
Sp5g11300 Schrenkiella parvula HOM05D001749 ORTHO05D001632 1.7e-08 64.3 271 28.0
THA.LOC104819200 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 2.2e-08 63.9 270 29.6
Cc07_g09890 Coffea canephora HOM05D001749 ORTHO05D001632 2.9e-08 63.5 269 25.7
MELO3C000897.2 Cucumis melo HOM05D024629 ORTHO05D025095 2.9e-08 63.5 215 27.9
COL.COLO4_22034 Corchorus olitorius HOM05D001749 ORTHO05D001632 3.8e-08 63.2 271 27.3
Duzib116G0736 Durio zibethinus HOM05D009764 ORTHO05D012097 3.8e-08 63.2 270 26.7
Duzib132G0910 Durio zibethinus HOM05D001749 ORTHO05D001632 3.8e-08 63.2 263 28.1
Eucgr.I01283 Eucalyptus grandis HOM05D001749 ORTHO05D001632 3.8e-08 63.2 276 26.8
Solyc03g033860.1 Solanum lycopersicum HOM05D001749 ORTHO05D001632 3.8e-08 63.2 241 27.8
BcaB05g23254 Brassica carinata HOM05D001749 ORTHO05D001632 5.0e-08 62.8 279 28.0
BcaB05g23255 Brassica carinata HOM05D001749 ORTHO05D001632 5.0e-08 62.8 279 28.0
C07p46070 Brassica napus HOM05D001749 ORTHO05D001632 5.0e-08 62.8 277 27.4
Duzib248G0723 Durio zibethinus HOM05D001749 ORTHO05D001632 5.0e-08 62.8 263 28.1
Gohir.D11G189200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 6.5e-08 62.4 269 28.3
A09p44040 Brassica napus HOM05D001749 ORTHO05D001632 8.5e-08 62.0 278 27.0
BolC7t45123H Brassica oleracea HOM05D001749 ORTHO05D001632 8.5e-08 62.0 271 27.3
BraA09t39862Z Brassica rapa HOM05D001749 ORTHO05D001632 8.5e-08 62.0 278 27.0
Oeu041631.1 Olea europaea HOM05D001749 ORTHO05D001632 8.5e-08 62.0 269 24.2
Thecc.01G031200 Theobroma cacao HOM05D001749 ORTHO05D001632 8.5e-08 62.0 252 30.2
BraA01t02289Z Brassica rapa HOM05D001749 ORTHO05D001632 1.1e-07 61.6 271 27.3
Gohir.A01G114500 Gossypium hirsutum HOM05D009764 ORTHO05D012097 1.1e-07 61.6 285 27.4
Gohir.D12G063200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.5e-07 61.2 268 27.2
Gorai.007G201500 Gossypium raimondii HOM05D001749 ORTHO05D001632 1.5e-07 61.2 269 28.6
PGR142G0388 Punica granatum HOM05D001749 ORTHO05D001632 1.5e-07 61.2 262 27.1
RcHm_v2.0_Chr6g0265051 Rosa chinensis HOM05D001749 ORTHO05D001632 1.5e-07 61.2 273 29.7
Thecc.02G082100 Theobroma cacao HOM05D001749 ORTHO05D001632 1.5e-07 61.2 263 26.6
A01p23800 Brassica napus HOM05D001749 ORTHO05D001632 1.9e-07 60.8 271 27.3
Potri.005G229800 Populus trichocarpa HOM05D020394 ORTHO05D012097 1.9e-07 60.8 284 26.1
Solyc04g080640.1 Solanum lycopersicum HOM05D001749 ORTHO05D001632 1.9e-07 60.8 292 27.7
COL.COLO4_25968 Corchorus olitorius HOM05D001749 ORTHO05D001632 2.5e-07 60.5 266 25.9
Nitab4.5_0003265g0050 Nicotiana tabacum HOM05D001749 ORTHO05D001632 2.5e-07 60.5 286 26.9
Gorai.008G066400 Gossypium raimondii HOM05D001749 ORTHO05D001632 3.2e-07 60.1 268 27.2
Oeu030425.2 Olea europaea HOM05D001749 ORTHO05D001632 3.2e-07 60.1 261 24.9
Sopen04g034230 Solanum pennellii HOM05D001749 ORTHO05D001632 3.2e-07 60.1 292 27.4
CiPaw.02G020500 Carya illinoinensis HOM05D001749 ORTHO05D001632 4.2e-07 59.7 265 25.3
FvH4_2g39470 Fragaria vesca HOM05D024874 ORTHO05D025557 4.2e-07 59.7 278 26.6
Lj4C36T10 Lonicera japonica HOM05D001749 ORTHO05D001632 4.2e-07 59.7 270 28.1
AL8G45100 Arabidopsis lyrata HOM05D001749 ORTHO05D001632 5.5e-07 59.3 270 27.8
ClCG08G014830 Citrullus lanatus HOM05D024629 ORTHO05D025095 5.5e-07 59.3 263 25.5
BcaB01g00565 Brassica carinata HOM05D001749 ORTHO05D001632 7.2e-07 58.9 277 27.4
BcaC07g39561 Brassica carinata HOM05D001749 ORTHO05D001632 7.2e-07 58.9 270 27.0
BcaC09g50057 Brassica carinata HOM05D001749 ORTHO05D001632 7.2e-07 58.9 283 28.6
C01p29520 Brassica napus HOM05D001749 ORTHO05D001632 7.2e-07 58.9 283 28.6
BolC1t02894H Brassica oleracea HOM05D001749 ORTHO05D001632 7.2e-07 58.9 283 28.6
Manes.02G096700 Manihot esculenta HOM05D001749 ORTHO05D001632 7.2e-07 58.9 263 25.1
Sed0016213 Sechium edule HOM05D001749 ORTHO05D001632 7.2e-07 58.9 277 27.4
Gorai.002G126600 Gossypium raimondii HOM05D009764 ORTHO05D012097 9.4e-07 58.5 285 26.7
HanXRQChr04g0103991 Helianthus annuus HOM05D001749 ORTHO05D001632 9.4e-07 58.5 270 26.7
Nitab4.5_0009228g0010 Nicotiana tabacum HOM05D001749 ORTHO05D001632 9.4e-07 58.5 286 25.5
BcaC04g23126 Brassica carinata HOM05D001749 ORTHO05D001632 1.2e-06 58.2 271 27.3
A03p48050 Brassica napus HOM05D001749 ORTHO05D001632 1.2e-06 58.2 269 26.0
BolC9t54075H Brassica oleracea HOM05D001749 ORTHO05D001632 1.2e-06 58.2 271 27.3
BraA03t13912Z Brassica rapa HOM05D001749 ORTHO05D001632 1.2e-06 58.2 269 26.0
CAN.G358.46 Capsicum annuum HOM05D001749 ORTHO05D001632 1.2e-06 58.2 245 26.9
Dinv39444 Davidia involucrata HOM05D001749 ORTHO05D001632 1.2e-06 58.2 263 30.0
MD05G1064000 Malus domestica HOM05D001749 ORTHO05D001632 1.2e-06 58.2 270 26.7
ATR0568G223 Amborella trichopoda HOM05D001749 ORTHO05D001632 1.6e-06 57.8 264 28.0
FAN23G0952 Fragaria x ananassa HOM05D001749 ORTHO05D001632 1.6e-06 57.8 267 25.5
FAN28G1045 Fragaria x ananassa HOM05D001749 ORTHO05D001632 1.6e-06 57.8 267 25.5
Gohir.D05G195300 Gossypium hirsutum HOM05D009764 ORTHO05D012097 1.6e-06 57.8 303 24.4
Sabra02G0026800 Salix brachista HOM05D020394 ORTHO05D012097 1.6e-06 57.8 297 24.9
BcaNung05716 Brassica carinata HOM05D001749 ORTHO05D001632 2.1e-06 57.4 268 28.4
FAN20G0609 Fragaria x ananassa HOM05D024874 ORTHO05D025557 2.1e-06 57.4 279 26.5
Gohir.D13G031200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 2.1e-06 57.4 264 28.0
TPR.G12430 Trifolium pratense HOM05D016445 ORTHO05D019220 2.1e-06 57.4 299 29.8
Gohir.A11G182600 Gossypium hirsutum HOM05D001749 ORTHO05D001632 2.7e-06 57.0 272 26.8
HanXRQChr11g0325491 Helianthus annuus HOM05D001749 ORTHO05D001632 2.7e-06 57.0 272 26.1
Manes.18G019775 Manihot esculenta HOM05D020394 ORTHO05D012097 2.7e-06 57.0 287 29.6
Peaxi162Scf00140g00031 Petunia axillaris HOM05D001749 ORTHO05D001632 2.7e-06 57.0 278 28.8
FAN26G1634 Fragaria x ananassa HOM05D001749 ORTHO05D001632 3.6e-06 56.6 265 26.0
Gohir.D01G102900 Gossypium hirsutum HOM05D009764 ORTHO05D012097 3.6e-06 56.6 289 27.7
Gohir.D10G091900 Gossypium hirsutum HOM05D001749 ORTHO05D001632 4.7e-06 56.2 268 26.9
Gorai.009G200200 Gossypium raimondii HOM05D009764 ORTHO05D012097 4.7e-06 56.2 310 24.2
Hma1.2p1_0469F.1_g159000 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 4.7e-06 56.2 270 26.7
THA.LOC104818171 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 4.7e-06 56.2 267 27.3
Gohir.A13G033300 Gossypium hirsutum HOM05D001749 ORTHO05D001632 6.1e-06 55.8 264 27.7
Gorai.011G100900 Gossypium raimondii HOM05D001749 ORTHO05D001632 6.1e-06 55.8 268 26.5
Gorai.013G035600 Gossypium raimondii HOM05D001749 ORTHO05D001632 6.1e-06 55.8 264 27.7
TWI31G0051 Tripterygium wilfordii HOM05D001749 ORTHO05D001632 6.1e-06 55.8 264 25.0
Cc02_g17320 Coffea canephora HOM05D001749 ORTHO05D001632 8.0e-06 55.5 273 27.5
Nitab4.5_0000344g0170 Nicotiana tabacum HOM05D001749 ORTHO05D001632 8.0e-06 55.5 244 27.0


User provided reference genes

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