Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 8.8e-119 430.3 209 100.0
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.1e-100 370.2 209 85.6
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 2.2e-98 362.5 206 84.0
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 2.9e-98 362.1 204 84.8
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 3.8e-98 361.7 208 82.7
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 1.9e-97 359.4 206 83.0
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 4.2e-97 358.2 207 81.2
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 2.7e-96 355.5 209 82.3
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 3.6e-96 355.1 206 82.5
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 4.7e-96 354.8 206 82.5
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 8.0e-96 354.0 209 80.9
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 8.0e-96 354.0 209 80.9
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 1.8e-95 352.8 209 82.8
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 1.8e-95 352.8 209 81.8
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 3.0e-95 352.1 207 81.6
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 4.0e-95 351.7 209 81.3
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 5.2e-95 351.3 207 82.1
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 6.7e-95 350.9 209 80.9
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 6.7e-95 350.9 204 82.4
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 8.8e-95 350.5 207 80.7
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 1.2e-94 350.1 207 81.2
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 1.2e-94 350.1 207 79.7
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 2.0e-94 349.4 209 78.5
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 2.6e-94 349.0 201 82.6
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 2.6e-94 349.0 201 82.6
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 4.4e-94 348.2 209 80.9
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 5.7e-94 347.8 210 79.5
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 1.7e-93 346.3 209 80.9
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 1.7e-93 346.3 209 79.9
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.2e-93 345.9 209 80.4
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 2.8e-93 345.5 206 78.2
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 3.7e-93 345.1 207 79.2
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 1.1e-92 343.6 209 79.9
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 1.4e-92 343.2 211 79.6
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 1.8e-92 342.8 209 79.4
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 2.4e-92 342.4 207 79.7
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.4e-92 342.4 209 79.9
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 2.4e-92 342.4 210 78.6
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 3.1e-92 342.0 209 80.4
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 3.1e-92 342.0 209 78.5
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 3.1e-92 342.0 209 79.4
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 3.1e-92 342.0 209 80.9
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 5.3e-92 341.3 208 78.8
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 5.3e-92 341.3 205 79.0
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.2e-91 340.1 209 79.4
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 1.2e-91 340.1 209 78.5
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 2.0e-91 339.3 207 78.3
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 2.7e-91 339.0 209 78.9
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 2.7e-91 339.0 206 77.7
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 3.5e-91 338.6 209 78.5
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 5.9e-91 337.8 209 78.9
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 7.7e-91 337.4 221 76.5
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 7.7e-91 337.4 207 76.3
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 2.2e-90 335.9 209 78.5
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 3.8e-90 335.1 207 78.3
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 1.5e-89 333.2 209 78.0
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.5e-89 333.2 211 77.7
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 1.9e-89 332.8 202 81.2
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 1.9e-89 332.8 209 78.0
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 3.2e-89 332.0 209 78.5
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 5.5e-89 331.3 209 78.0
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 9.4e-89 330.5 201 78.1
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 9.4e-89 330.5 201 79.1
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 1.6e-88 329.7 210 79.5
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 6.1e-88 327.8 202 76.7
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 6.1e-88 327.8 201 78.1
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 1.0e-87 327.0 209 75.1
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.0e-87 327.0 202 79.7
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 1.0e-87 327.0 202 76.7
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 1.4e-87 326.6 205 77.6
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 1.4e-87 326.6 202 78.2
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 1.8e-87 326.2 202 77.7
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 2.3e-87 325.9 202 75.7
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 3.0e-87 325.5 208 75.0
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 4.0e-87 325.1 206 77.2
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 5.2e-87 324.7 202 79.2
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 5.2e-87 324.7 201 78.1
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 6.8e-87 324.3 199 78.9
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 6.8e-87 324.3 209 78.0
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 5.7e-86 321.2 201 75.1
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 7.5e-86 320.9 204 77.0
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 9.8e-86 320.5 206 76.2
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.7e-85 319.7 209 76.1
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 2.8e-85 318.9 202 76.2
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 4.8e-85 318.2 206 73.3
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 6.3e-85 317.8 206 75.2
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 8.3e-85 317.4 204 75.5
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 2.4e-84 315.8 199 76.9
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 2.4e-84 315.8 204 75.0
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 5.4e-84 314.7 202 75.7
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 5.4e-84 314.7 204 74.0
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 1.2e-83 313.5 205 74.6
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 1.2e-83 313.5 205 74.6
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 2.0e-83 312.8 232 67.7
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 3.5e-83 312.0 196 75.5
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.5e-81 306.6 204 74.0
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.9e-81 306.2 204 74.0
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 1.9e-81 306.2 204 74.0
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 4.2e-81 305.1 183 79.8
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 2.9e-74 282.3 207 70.5
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 5.6e-73 278.1 175 77.1
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 1.6e-72 276.6 205 65.9
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 6.4e-69 264.6 202 65.3
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 1.1e-68 263.8 167 77.8
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 7.0e-68 261.2 167 76.0
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 1.2e-67 260.4 201 62.7
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.3e-66 256.1 209 63.6
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 8.6e-66 254.2 209 63.2
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 7.3e-65 251.1 202 57.9
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 1.6e-64 250.0 201 60.7
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 3.4e-62 242.3 154 77.9
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 1.7e-61 240.0 164 69.5
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 1.4e-60 236.9 206 57.8
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 5.4e-60 235.0 206 55.8
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 4.6e-59 231.9 199 60.8
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 3.6e-56 222.2 149 74.5
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 2.3e-55 219.5 136 80.1
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 9.5e-49 197.6 124 71.8
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 5.8e-46 188.3 121 76.0
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 7.6e-46 188.0 121 76.0
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 3.8e-45 185.7 149 66.4
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 3.8e-45 185.7 172 59.3
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.9e-45 185.3 149 66.4
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 4.2e-44 182.2 97 83.5
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 1.6e-35 153.7 100 77.0
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 4.6e-35 152.1 163 49.1
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 3.3e-33 146.0 202 42.1
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 1.7e-29 133.7 208 43.3
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 1.1e-25 120.9 75 73.3
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 1.1e-25 120.9 75 74.7
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.6e-22 109.8 104 60.6
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 4.5e-22 109.0 75 70.7
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 7.6e-22 108.2 60 80.0
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 3.8e-13 79.3 37 91.9
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 1.6e-08 63.9 37 78.4
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 4.8e-08 62.4 36 77.8
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 1.1e-07 61.2 41 65.9
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 1.8e-07 60.5 37 78.4
MBI11_g04264_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D000004 5.9e-06 55.5 29 86.2


User provided reference genes

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