Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 4.8e-84 314.7 188 100.0
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 1.8e-54 216.5 188 63.3
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 9.8e-53 210.7 188 62.8
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.6e-50 203.4 188 66.0
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 1.6e-50 203.4 188 60.1
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.0e-49 200.7 196 59.7
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 5.0e-49 198.4 199 65.8
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 3.3e-48 195.7 198 60.1
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 3.3e-48 195.7 203 60.6
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 4.3e-48 195.3 191 60.2
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 5.6e-48 194.9 199 62.8
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.2e-47 193.7 190 63.2
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 2.1e-47 193.0 198 68.2
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 4.7e-47 191.8 203 66.0
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 6.2e-47 191.4 194 67.0
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.1e-46 190.7 198 62.6
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 6.8e-46 188.0 203 57.6
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.2e-45 187.2 191 56.5
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.5e-45 186.8 190 60.5
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.5e-45 186.8 202 62.4
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 2.6e-45 186.0 200 65.5
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.6e-45 186.0 138 71.0
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 5.8e-45 184.9 198 59.1
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 5.8e-45 184.9 198 63.1
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 9.8e-45 184.1 198 58.6
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.2e-44 183.0 145 66.2
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 3.7e-44 182.2 198 62.6
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 3.7e-44 182.2 190 66.8
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 4.9e-44 181.8 137 73.7
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 1.1e-43 180.6 196 57.1
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.9e-43 179.9 201 56.7
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 2.4e-43 179.5 150 67.3
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 3.2e-43 179.1 206 54.9
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 5.4e-43 178.3 135 71.9
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 7.0e-43 177.9 195 58.5
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 9.2e-43 177.6 196 61.2
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 9.2e-43 177.6 190 55.8
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 9.2e-43 177.6 205 57.1
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.2e-42 177.2 199 56.3
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.6e-42 176.8 198 66.2
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 1.6e-42 176.8 195 65.1
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.6e-42 176.8 135 71.1
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 1.6e-42 176.8 206 54.4
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 2.0e-42 176.4 199 56.3
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 2.7e-42 176.0 200 59.5
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 3.5e-42 175.6 198 61.1
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 7.8e-42 174.5 198 64.1
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 1.0e-41 174.1 196 63.8
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.7e-41 173.3 202 54.0
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.7e-41 173.3 188 54.3
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.7e-41 173.3 192 60.9
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 5.0e-41 171.8 206 54.4
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 6.6e-41 171.4 137 70.1
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 8.6e-41 171.0 202 53.5
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 8.6e-41 171.0 200 55.5
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.5e-40 170.2 190 57.9
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.9e-40 169.9 198 54.0
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.9e-40 169.9 201 54.7
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 2.5e-40 169.5 199 58.8
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 3.3e-40 169.1 193 55.4
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 3.3e-40 169.1 148 64.9
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 3.3e-40 169.1 133 69.9
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 4.3e-40 168.7 200 60.5
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 5.6e-40 168.3 194 55.2
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 5.6e-40 168.3 152 61.2
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 7.3e-40 167.9 139 68.3
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 9.5e-40 167.5 191 64.9
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 1.6e-39 166.8 135 66.7
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.6e-39 166.8 137 68.6
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 2.1e-39 166.4 135 68.1
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 2.1e-39 166.4 138 65.9
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.1e-39 166.4 192 58.3
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 2.8e-39 166.0 189 59.3
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 3.6e-39 165.6 150 62.0
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 3.6e-39 165.6 200 53.0
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 3.6e-39 165.6 142 65.5
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 4.7e-39 165.2 120 72.5
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 6.2e-39 164.9 144 61.1
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 6.2e-39 164.9 135 65.9
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 8.1e-39 164.5 138 68.8
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 8.1e-39 164.5 137 67.9
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 8.1e-39 164.5 202 51.5
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 8.1e-39 164.5 184 56.0
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.1e-38 164.1 146 64.4
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.1e-38 164.1 197 57.4
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 1.1e-38 164.1 159 62.9
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.4e-38 163.7 135 68.1
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.4e-38 163.7 133 68.4
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 1.4e-38 163.7 136 65.4
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.8e-38 163.3 138 68.1
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 6.8e-38 161.4 159 59.1
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 6.8e-38 161.4 135 65.2
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 8.9e-38 161.0 199 52.8
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.2e-37 160.6 190 52.6
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 1.2e-37 160.6 155 61.3
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.6e-37 159.5 194 58.2
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 3.4e-37 159.1 146 64.4
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 3.4e-37 159.1 133 66.2
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 4.4e-37 158.7 133 64.7
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 4.4e-37 158.7 160 56.9
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 5.8e-37 158.3 136 66.9
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 9.9e-37 157.5 164 54.9
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 1.3e-36 157.1 189 58.2
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.3e-36 157.1 205 56.1
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 2.2e-36 156.4 135 64.4
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 8.3e-36 154.5 192 54.2
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 1.1e-35 154.1 162 58.6
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 1.1e-35 154.1 162 58.6
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 1.1e-35 154.1 197 54.8
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.9e-35 153.3 137 61.3
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 2.4e-35 152.9 85 85.9
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 3.2e-35 152.5 196 51.5
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 5.4e-35 151.8 170 55.9
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 5.4e-35 151.8 163 54.6
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 9.2e-35 151.0 133 61.7
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.6e-34 150.2 163 57.7
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 1.6e-34 150.2 136 60.3
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 2.7e-34 149.4 139 62.6
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 2.7e-34 149.4 139 61.9
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 1.3e-33 147.1 185 49.2
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.7e-33 146.7 195 51.3
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 6.6e-33 144.8 87 80.5
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 1.1e-32 144.1 153 55.6
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 4.4e-29 132.1 127 57.5
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 4.1e-27 125.6 75 81.3
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 4.1e-27 125.6 70 84.3
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 2.7e-26 122.9 69 81.2
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 4.6e-26 122.1 156 48.1
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 1.6e-23 113.6 106 60.4
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 1.4e-22 110.5 82 65.9
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 1.5e-21 107.1 98 62.2
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 3.4e-21 105.9 65 76.9
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 3.4e-21 105.9 71 74.6
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 9.9e-21 104.4 152 43.4
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 1.3e-20 104.0 137 46.0
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 1.9e-19 100.1 158 45.6
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.0e-17 94.4 124 50.0
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.3e-17 94.0 83 55.4
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.7e-17 93.6 106 51.9
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 5.1e-17 92.0 83 50.6
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 4.0e-14 82.4 152 42.1
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 7.6e-13 78.2 85 55.3
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 1.1e-08 64.3 67 49.3
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 4.8e-07 58.9 39 64.1


User provided reference genes

Program Settings